Variant: 13:39532864-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:C
Alt. Allele:T
Alt. Allele Frequency:0.383149(42951/112100)
dbSNP:rs9566382
PGG.SNV:13:39532864-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39532864-C-T 13 39532864 C C T Liaoning 902 2182 0.413382 Northeast Han 1993 4872 0.409072
13:39532864-C-T 13 39532864 C C T Hubei 1237 3276 0.377595 Southwest Han 2507 6538 0.383451
13:39532864-C-T 13 39532864 C C T Shaanxi 3684 9112 0.404302 Northwest Han 3905 9674 0.403659
13:39532864-C-T 13 39532864 C C T Sichuan 584 1474 0.396201 Southwest Han 2507 6538 0.383451
13:39532864-C-T 13 39532864 C C T Fujian 221 574 0.385017 South coast Han 6171 16494 0.374136
13:39532864-C-T 13 39532864 C C T Shanghai 6566 17836 0.368132 Southeast Han 17356 46802 0.370839
13:39532864-C-T 13 39532864 C C T Guangdong 657 1788 0.36745 South coast Han 6171 16494 0.374136
13:39532864-C-T 13 39532864 C C T Zhejiang 3606 9874 0.365202 Southeast Han 17356 46802 0.370839
13:39532864-C-T 13 39532864 C C T Tianjin 446 1146 0.38918 Central Han 11019 27720 0.397511
13:39532864-C-T 13 39532864 C C T Jiangsu 5567 14724 0.37809 Southeast Han 17356 46802 0.370839
13:39532864-C-T 13 39532864 C C T Jiangxi 244 708 0.344633 Southeast Han 17356 46802 0.370839
13:39532864-C-T 13 39532864 C C T Hunan 146 404 0.361386 Southwest Han 2507 6538 0.383451
13:39532864-C-T 13 39532864 C C T Chongqing 423 1104 0.383152 Southwest Han 2507 6538 0.383451
13:39532864-C-T 13 39532864 C C T Heilongjiang 745 1852 0.402268 Northeast Han 1993 4872 0.409072
13:39532864-C-T 13 39532864 C C T Gansu 133 324 0.410494 Northwest Han 3905 9674 0.403659
13:39532864-C-T 13 39532864 C C T Jilin 346 838 0.412888 Northeast Han 1993 4872 0.409072
13:39532864-C-T 13 39532864 C C T Anhui 1373 3660 0.375137 Southeast Han 17356 46802 0.370839
13:39532864-C-T 13 39532864 C C T Hebei 871 2176 0.400276 Central Han 11019 27720 0.397511
13:39532864-C-T 13 39532864 C C T Neimenggu 24 50 0.48 Northwest Han 3905 9674 0.403659
13:39532864-C-T 13 39532864 C C T Xinjiang 53 170 0.311765 Northwest Han 3905 9674 0.403659
13:39532864-C-T 13 39532864 C C T Hainan 5 14 0.357143 South coast Han 6171 16494 0.374136
13:39532864-C-T 13 39532864 C C T Singapore 2748 7214 0.380926 South coast Han 6171 16494 0.374136
13:39532864-C-T 13 39532864 C C T Xianggang 2 4 0.5 South coast Han 6171 16494 0.374136
13:39532864-C-T 13 39532864 C C T Guizhou 23 48 0.479167 Southwest Han 2507 6538 0.383451
13:39532864-C-T 13 39532864 C C T Qinghai 2 2 1.0 Northwest Han 3905 9674 0.403659
13:39532864-C-T 13 39532864 C C T Yunnan 93 230 0.404348 Southwest Han 2507 6538 0.383451
13:39532864-C-T 13 39532864 C C T Xizang 1 2 0.5 Southwest Han 2507 6538 0.383451
13:39532864-C-T 13 39532864 C C T Ningxia 9 16 0.5625 Northwest Han 3905 9674 0.403659
13:39532864-C-T 13 39532864 C C T Guangxi 30 76 0.394737 South coast Han 6171 16494 0.374136
13:39532864-C-T 13 39532864 C C T Shandong 1886 4724 0.399238 Central Han 11019 27720 0.397511
13:39532864-C-T 13 39532864 C C T Beijing 6101 15426 0.395501 Central Han 11019 27720 0.397511
13:39532864-C-T 13 39532864 C C T Henan 825 2064 0.399709 Central Han 11019 27720 0.397511
13:39532864-C-T 13 39532864 C C T Shanxi 890 2184 0.407509 Central Han 11019 27720 0.397511

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39532864-C-T 13 39532864 C C T Northeast Han 1993 4872 0.409072
13:39532864-C-T 13 39532864 C C T Southwest Han 2507 6538 0.383451
13:39532864-C-T 13 39532864 C C T Northwest Han 3905 9674 0.403659
13:39532864-C-T 13 39532864 C C T South coast Han 6171 16494 0.374136
13:39532864-C-T 13 39532864 C C T Southeast Han 17356 46802 0.370839
13:39532864-C-T 13 39532864 C C T Central Han 11019 27720 0.397511

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.