Variant: 13:39532546-T-A
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:T
Alt. Allele:A
Alt. Allele Frequency:0.38463(42977/111736)
dbSNP:rs9548566
PGG.SNV:13:39532546-T-A

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39532546-T-A 13 39532546 T T A Zhejiang 3603 9834 0.366382 Southeast Han 17353 46646 0.372015
13:39532546-T-A 13 39532546 T T A Tianjin 448 1140 0.392982 Central Han 11026 27634 0.399001
13:39532546-T-A 13 39532546 T T A Shanghai 6568 17770 0.369612 Southeast Han 17353 46646 0.372015
13:39532546-T-A 13 39532546 T T A Hunan 147 404 0.363861 Southwest Han 2517 6506 0.386874
13:39532546-T-A 13 39532546 T T A Sichuan 586 1472 0.398098 Southwest Han 2517 6506 0.386874
13:39532546-T-A 13 39532546 T T A Hebei 872 2166 0.402585 Central Han 11026 27634 0.399001
13:39532546-T-A 13 39532546 T T A Shaanxi 3689 9104 0.405207 Northwest Han 3912 9666 0.404718
13:39532546-T-A 13 39532546 T T A Heilongjiang 747 1850 0.403784 Northeast Han 1998 4860 0.411111
13:39532546-T-A 13 39532546 T T A Guangdong 659 1786 0.368981 South coast Han 6171 16424 0.375731
13:39532546-T-A 13 39532546 T T A Shanxi 890 2176 0.409007 Central Han 11026 27634 0.399001
13:39532546-T-A 13 39532546 T T A Shandong 1884 4716 0.399491 Central Han 11026 27634 0.399001
13:39532546-T-A 13 39532546 T T A Jiangsu 5567 14694 0.378862 Southeast Han 17353 46646 0.372015
13:39532546-T-A 13 39532546 T T A Hubei 1239 3254 0.380762 Southwest Han 2517 6506 0.386874
13:39532546-T-A 13 39532546 T T A Henan 832 2060 0.403883 Central Han 11026 27634 0.399001
13:39532546-T-A 13 39532546 T T A Beijing 6100 15376 0.396722 Central Han 11026 27634 0.399001
13:39532546-T-A 13 39532546 T T A Guangxi 28 74 0.378378 South coast Han 6171 16424 0.375731
13:39532546-T-A 13 39532546 T T A Gansu 134 324 0.41358 Northwest Han 3912 9666 0.404718
13:39532546-T-A 13 39532546 T T A Jiangxi 247 708 0.34887 Southeast Han 17353 46646 0.372015
13:39532546-T-A 13 39532546 T T A Neimenggu 24 50 0.48 Northwest Han 3912 9666 0.404718
13:39532546-T-A 13 39532546 T T A Fujian 221 572 0.386364 South coast Han 6171 16424 0.375731
13:39532546-T-A 13 39532546 T T A Jilin 346 832 0.415865 Northeast Han 1998 4860 0.411111
13:39532546-T-A 13 39532546 T T A Singapore 2746 7174 0.382771 South coast Han 6171 16424 0.375731
13:39532546-T-A 13 39532546 T T A Xinjiang 54 170 0.317647 Northwest Han 3912 9666 0.404718
13:39532546-T-A 13 39532546 T T A Hainan 5 14 0.357143 South coast Han 6171 16424 0.375731
13:39532546-T-A 13 39532546 T T A Chongqing 428 1100 0.389091 Southwest Han 2517 6506 0.386874
13:39532546-T-A 13 39532546 T T A Xianggang 2 4 0.5 South coast Han 6171 16424 0.375731
13:39532546-T-A 13 39532546 T T A Liaoning 905 2178 0.415519 Northeast Han 1998 4860 0.411111
13:39532546-T-A 13 39532546 T T A Guizhou 23 48 0.479167 Southwest Han 2517 6506 0.386874
13:39532546-T-A 13 39532546 T T A Anhui 1368 3640 0.375824 Southeast Han 17353 46646 0.372015
13:39532546-T-A 13 39532546 T T A Yunnan 93 226 0.411504 Southwest Han 2517 6506 0.386874
13:39532546-T-A 13 39532546 T T A Ningxia 9 16 0.5625 Northwest Han 3912 9666 0.404718
13:39532546-T-A 13 39532546 T T A Qinghai 2 2 1.0 Northwest Han 3912 9666 0.404718
13:39532546-T-A 13 39532546 T T A Xizang 1 2 0.5 Southwest Han 2517 6506 0.386874

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39532546-T-A 13 39532546 T T A Southeast Han 17353 46646 0.372015
13:39532546-T-A 13 39532546 T T A Central Han 11026 27634 0.399001
13:39532546-T-A 13 39532546 T T A Southwest Han 2517 6506 0.386874
13:39532546-T-A 13 39532546 T T A Northwest Han 3912 9666 0.404718
13:39532546-T-A 13 39532546 T T A Northeast Han 1998 4860 0.411111
13:39532546-T-A 13 39532546 T T A South coast Han 6171 16424 0.375731

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.