Variant: 13:39530473-T-G
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:T
Alt. Allele:G
Alt. Allele Frequency:0.050887(5468/107454)
dbSNP:rs73169426
PGG.SNV:13:39530473-T-G

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39530473-T-G 13 39530473 T T G Zhejiang 546 9438 0.057851 Southeast Han 2420 44800 0.054018
13:39530473-T-G 13 39530473 T T G Shanghai 883 17080 0.051698 Southeast Han 2420 44800 0.054018
13:39530473-T-G 13 39530473 T T G Tianjin 53 1096 0.048358 Central Han 1361 26598 0.051169
13:39530473-T-G 13 39530473 T T G Sichuan 68 1444 0.047091 Southwest Han 295 6274 0.047019
13:39530473-T-G 13 39530473 T T G Shaanxi 424 8818 0.048083 Northwest Han 463 9374 0.049392
13:39530473-T-G 13 39530473 T T G Beijing 769 14760 0.0521 Central Han 1361 26598 0.051169
13:39530473-T-G 13 39530473 T T G Liaoning 147 2162 0.067993 Northeast Han 293 4778 0.061323
13:39530473-T-G 13 39530473 T T G Shandong 218 4556 0.047849 Central Han 1361 26598 0.051169
13:39530473-T-G 13 39530473 T T G Heilongjiang 99 1792 0.055246 Northeast Han 293 4778 0.061323
13:39530473-T-G 13 39530473 T T G Guangdong 93 1778 0.052306 South coast Han 636 15630 0.040691
13:39530473-T-G 13 39530473 T T G Jiangsu 739 14066 0.052538 Southeast Han 2420 44800 0.054018
13:39530473-T-G 13 39530473 T T G Hubei 145 3124 0.046415 Southwest Han 295 6274 0.047019
13:39530473-T-G 13 39530473 T T G Hebei 91 2088 0.043582 Central Han 1361 26598 0.051169
13:39530473-T-G 13 39530473 T T G Henan 127 2028 0.062623 Central Han 1361 26598 0.051169
13:39530473-T-G 13 39530473 T T G Chongqing 57 1050 0.054286 Southwest Han 295 6274 0.047019
13:39530473-T-G 13 39530473 T T G Fujian 23 548 0.041971 South coast Han 636 15630 0.040691
13:39530473-T-G 13 39530473 T T G Shanxi 103 2070 0.049758 Central Han 1361 26598 0.051169
13:39530473-T-G 13 39530473 T T G Gansu 20 324 0.061728 Northwest Han 463 9374 0.049392
13:39530473-T-G 13 39530473 T T G Hunan 16 388 0.041237 Southwest Han 295 6274 0.047019
13:39530473-T-G 13 39530473 T T G Jiangxi 50 704 0.071023 Southeast Han 2420 44800 0.054018
13:39530473-T-G 13 39530473 T T G Xinjiang 14 166 0.084337 Northwest Han 463 9374 0.049392
13:39530473-T-G 13 39530473 T T G Hainan 0 14 0.0 South coast Han 636 15630 0.040691
13:39530473-T-G 13 39530473 T T G Neimenggu 4 48 0.083333 Northwest Han 463 9374 0.049392
13:39530473-T-G 13 39530473 T T G Guizhou 3 46 0.065217 Southwest Han 295 6274 0.047019
13:39530473-T-G 13 39530473 T T G Xianggang 0 4 0.0 South coast Han 636 15630 0.040691
13:39530473-T-G 13 39530473 T T G Ningxia 1 16 0.0625 Northwest Han 463 9374 0.049392
13:39530473-T-G 13 39530473 T T G Qinghai 0 2 0.0 Northwest Han 463 9374 0.049392
13:39530473-T-G 13 39530473 T T G Singapore 292 6830 0.042753 South coast Han 636 15630 0.040691
13:39530473-T-G 13 39530473 T T G Yunnan 6 220 0.027273 Southwest Han 295 6274 0.047019
13:39530473-T-G 13 39530473 T T G Guangxi 5 70 0.071429 South coast Han 636 15630 0.040691
13:39530473-T-G 13 39530473 T T G Xizang 0 2 0.0 Southwest Han 295 6274 0.047019
13:39530473-T-G 13 39530473 T T G Anhui 202 3512 0.057517 Southeast Han 2420 44800 0.054018
13:39530473-T-G 13 39530473 T T G Jilin 47 824 0.057039 Northeast Han 293 4778 0.061323

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39530473-T-G 13 39530473 T T G Southeast Han 2420 44800 0.054018
13:39530473-T-G 13 39530473 T T G Central Han 1361 26598 0.051169
13:39530473-T-G 13 39530473 T T G Southwest Han 295 6274 0.047019
13:39530473-T-G 13 39530473 T T G Northwest Han 463 9374 0.049392
13:39530473-T-G 13 39530473 T T G Northeast Han 293 4778 0.061323
13:39530473-T-G 13 39530473 T T G South coast Han 636 15630 0.040691

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.