Variant: 13:39530198-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:T
Alt. Allele:T
Alt. Allele Frequency:0.995659(110104/110584)
dbSNP:rs539688461
PGG.SNV:13:39530198-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39530198-C-T 13 39530198 C T T Shanxi 2146 2156 0.995362 Central Han 27208 27322 0.995828
13:39530198-C-T 13 39530198 C T T Shandong 4654 4672 0.996147 Central Han 27208 27322 0.995828
13:39530198-C-T 13 39530198 C T T Gansu 322 324 0.993827 Northwest Han 9504 9554 0.994767
13:39530198-C-T 13 39530198 C T T Guangdong 1776 1790 0.992179 South coast Han 16091 16166 0.995361
13:39530198-C-T 13 39530198 C T T Hebei 2149 2160 0.994907 Central Han 27208 27322 0.995828
13:39530198-C-T 13 39530198 C T T Tianjin 1126 1128 0.998227 Central Han 27208 27322 0.995828
13:39530198-C-T 13 39530198 C T T Jiangxi 702 706 0.994334 Southeast Han 46069 46254 0.996
13:39530198-C-T 13 39530198 C T T Jilin 831 834 0.996403 Northeast Han 4818 4846 0.994222
13:39530198-C-T 13 39530198 C T T Shaanxi 8944 8992 0.994662 Northwest Han 9504 9554 0.994767
13:39530198-C-T 13 39530198 C T T Chongqing 1086 1094 0.992687 Southwest Han 6414 6442 0.995654
13:39530198-C-T 13 39530198 C T T Shanghai 17570 17640 0.996032 Southeast Han 46069 46254 0.996
13:39530198-C-T 13 39530198 C T T Anhui 3609 3614 0.998616 Southeast Han 46069 46254 0.996
13:39530198-C-T 13 39530198 C T T Beijing 15107 15164 0.996241 Central Han 27208 27322 0.995828
13:39530198-C-T 13 39530198 C T T Hainan 14 14 1.0 South coast Han 16091 16166 0.995361
13:39530198-C-T 13 39530198 C T T Fujian 555 562 0.987544 South coast Han 16091 16166 0.995361
13:39530198-C-T 13 39530198 C T T Liaoning 2159 2174 0.9931 Northeast Han 4818 4846 0.994222
13:39530198-C-T 13 39530198 C T T Qinghai 2 2 1.0 Northwest Han 9504 9554 0.994767
13:39530198-C-T 13 39530198 C T T Henan 2026 2042 0.992165 Central Han 27208 27322 0.995828
13:39530198-C-T 13 39530198 C T T Heilongjiang 1828 1838 0.994559 Northeast Han 4818 4846 0.994222
13:39530198-C-T 13 39530198 C T T Jiangsu 14470 14542 0.995049 Southeast Han 46069 46254 0.996
13:39530198-C-T 13 39530198 C T T Guangxi 72 72 1.0 South coast Han 16091 16166 0.995361
13:39530198-C-T 13 39530198 C T T Yunnan 222 222 1.0 Southwest Han 6414 6442 0.995654
13:39530198-C-T 13 39530198 C T T Singapore 7034 7064 0.995753 South coast Han 16091 16166 0.995361
13:39530198-C-T 13 39530198 C T T Xianggang 4 4 1.0 South coast Han 16091 16166 0.995361
13:39530198-C-T 13 39530198 C T T Neimenggu 50 50 1.0 Northwest Han 9504 9554 0.994767
13:39530198-C-T 13 39530198 C T T Xizang 2 2 1.0 Southwest Han 6414 6442 0.995654
13:39530198-C-T 13 39530198 C T T Zhejiang 9718 9752 0.996514 Southeast Han 46069 46254 0.996
13:39530198-C-T 13 39530198 C T T Xinjiang 170 170 1.0 Northwest Han 9504 9554 0.994767
13:39530198-C-T 13 39530198 C T T Hunan 395 396 0.997475 Southwest Han 6414 6442 0.995654
13:39530198-C-T 13 39530198 C T T Guizhou 48 48 1.0 Southwest Han 6414 6442 0.995654
13:39530198-C-T 13 39530198 C T T Ningxia 16 16 1.0 Northwest Han 9504 9554 0.994767
13:39530198-C-T 13 39530198 C T T Hubei 3210 3224 0.995658 Southwest Han 6414 6442 0.995654
13:39530198-C-T 13 39530198 C T T Sichuan 1451 1456 0.996566 Southwest Han 6414 6442 0.995654

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39530198-C-T 13 39530198 C T T Central Han 27208 27322 0.995828
13:39530198-C-T 13 39530198 C T T Northwest Han 9504 9554 0.994767
13:39530198-C-T 13 39530198 C T T South coast Han 16091 16166 0.995361
13:39530198-C-T 13 39530198 C T T Southeast Han 46069 46254 0.996
13:39530198-C-T 13 39530198 C T T Northeast Han 4818 4846 0.994222
13:39530198-C-T 13 39530198 C T T Southwest Han 6414 6442 0.995654

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.