Variant: 13:39530170-T-G
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:T
Alt. Allele:G
Alt. Allele Frequency:0.023604(2580/109304)
dbSNP:rs146620782
PGG.SNV:13:39530170-T-G

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39530170-T-G 13 39530170 T T G Heilongjiang 41 1814 0.022602 Northeast Han 144 4814 0.029913
13:39530170-T-G 13 39530170 T T G Shandong 123 4644 0.026486 Central Han 662 27058 0.024466
13:39530170-T-G 13 39530170 T T G Hebei 36 2106 0.017094 Central Han 662 27058 0.024466
13:39530170-T-G 13 39530170 T T G Liaoning 77 2166 0.035549 Northeast Han 144 4814 0.029913
13:39530170-T-G 13 39530170 T T G Sichuan 30 1450 0.02069 Southwest Han 137 6374 0.021494
13:39530170-T-G 13 39530170 T T G Beijing 362 15032 0.024082 Central Han 662 27058 0.024466
13:39530170-T-G 13 39530170 T T G Tianjin 37 1130 0.032743 Central Han 662 27058 0.024466
13:39530170-T-G 13 39530170 T T G Henan 59 2024 0.02915 Central Han 662 27058 0.024466
13:39530170-T-G 13 39530170 T T G Shanghai 414 17400 0.023793 Southeast Han 1142 45592 0.025048
13:39530170-T-G 13 39530170 T T G Zhejiang 269 9610 0.027992 Southeast Han 1142 45592 0.025048
13:39530170-T-G 13 39530170 T T G Shaanxi 172 8880 0.019369 Northwest Han 189 9434 0.020034
13:39530170-T-G 13 39530170 T T G Hunan 7 398 0.017588 Southwest Han 137 6374 0.021494
13:39530170-T-G 13 39530170 T T G Guangdong 51 1784 0.028587 South coast Han 306 16032 0.019087
13:39530170-T-G 13 39530170 T T G Shanxi 45 2122 0.021206 Central Han 662 27058 0.024466
13:39530170-T-G 13 39530170 T T G Singapore 131 7026 0.018645 South coast Han 306 16032 0.019087
13:39530170-T-G 13 39530170 T T G Xinjiang 5 168 0.029762 Northwest Han 189 9434 0.020034
13:39530170-T-G 13 39530170 T T G Hubei 70 3168 0.022096 Southwest Han 137 6374 0.021494
13:39530170-T-G 13 39530170 T T G Guangxi 4 76 0.052632 South coast Han 306 16032 0.019087
13:39530170-T-G 13 39530170 T T G Jiangxi 30 704 0.042614 Southeast Han 1142 45592 0.025048
13:39530170-T-G 13 39530170 T T G Anhui 99 3598 0.027515 Southeast Han 1142 45592 0.025048
13:39530170-T-G 13 39530170 T T G Neimenggu 2 48 0.041667 Northwest Han 189 9434 0.020034
13:39530170-T-G 13 39530170 T T G Guizhou 3 46 0.065217 Southwest Han 137 6374 0.021494
13:39530170-T-G 13 39530170 T T G Fujian 14 560 0.025 South coast Han 306 16032 0.019087
13:39530170-T-G 13 39530170 T T G Gansu 10 322 0.031056 Northwest Han 189 9434 0.020034
13:39530170-T-G 13 39530170 T T G Hainan 0 14 0.0 South coast Han 306 16032 0.019087
13:39530170-T-G 13 39530170 T T G Ningxia 0 14 0.0 Northwest Han 189 9434 0.020034
13:39530170-T-G 13 39530170 T T G Yunnan 1 228 0.004386 Southwest Han 137 6374 0.021494
13:39530170-T-G 13 39530170 T T G Xianggang 0 4 0.0 South coast Han 306 16032 0.019087
13:39530170-T-G 13 39530170 T T G Jilin 26 834 0.031175 Northeast Han 144 4814 0.029913
13:39530170-T-G 13 39530170 T T G Chongqing 26 1082 0.02403 Southwest Han 137 6374 0.021494
13:39530170-T-G 13 39530170 T T G Jiangsu 330 14280 0.023109 Southeast Han 1142 45592 0.025048
13:39530170-T-G 13 39530170 T T G Xizang 0 2 0.0 Southwest Han 137 6374 0.021494
13:39530170-T-G 13 39530170 T T G Qinghai 0 2 0.0 Northwest Han 189 9434 0.020034

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39530170-T-G 13 39530170 T T G Northeast Han 144 4814 0.029913
13:39530170-T-G 13 39530170 T T G Central Han 662 27058 0.024466
13:39530170-T-G 13 39530170 T T G Southwest Han 137 6374 0.021494
13:39530170-T-G 13 39530170 T T G Southeast Han 1142 45592 0.025048
13:39530170-T-G 13 39530170 T T G Northwest Han 189 9434 0.020034
13:39530170-T-G 13 39530170 T T G South coast Han 306 16032 0.019087

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.