Variant: 13:39530102-T-C
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:C
Alt. Allele:C
Alt. Allele Frequency:0.063805(6996/109646)
dbSNP:rs61945535
PGG.SNV:13:39530102-T-C

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39530102-T-C 13 39530102 T C C Zhejiang 674 9634 0.069961 Southeast Han 3113 45818 0.067943
13:39530102-T-C 13 39530102 T C C Liaoning 163 2172 0.075046 Northeast Han 346 4826 0.071695
13:39530102-T-C 13 39530102 T C C Tianjin 68 1116 0.060932 Central Han 1729 27126 0.06374
13:39530102-T-C 13 39530102 T C C Hunan 24 402 0.059701 Southwest Han 384 6402 0.059981
13:39530102-T-C 13 39530102 T C C Henan 142 2040 0.069608 Central Han 1729 27126 0.06374
13:39530102-T-C 13 39530102 T C C Shaanxi 534 8942 0.059718 Northwest Han 579 9502 0.060935
13:39530102-T-C 13 39530102 T C C Jiangsu 989 14434 0.068519 Southeast Han 3113 45818 0.067943
13:39530102-T-C 13 39530102 T C C Hebei 113 2114 0.053453 Central Han 1729 27126 0.06374
13:39530102-T-C 13 39530102 T C C Sichuan 79 1452 0.054408 Southwest Han 384 6402 0.059981
13:39530102-T-C 13 39530102 T C C Guangdong 103 1780 0.057865 South coast Han 845 15972 0.052905
13:39530102-T-C 13 39530102 T C C Guangxi 9 76 0.118421 South coast Han 845 15972 0.052905
13:39530102-T-C 13 39530102 T C C Shandong 280 4642 0.060319 Central Han 1729 27126 0.06374
13:39530102-T-C 13 39530102 T C C Hainan 0 14 0.0 South coast Han 845 15972 0.052905
13:39530102-T-C 13 39530102 T C C Hubei 203 3218 0.063083 Southwest Han 384 6402 0.059981
13:39530102-T-C 13 39530102 T C C Beijing 998 15110 0.066049 Central Han 1729 27126 0.06374
13:39530102-T-C 13 39530102 T C C Jiangxi 58 706 0.082153 Southeast Han 3113 45818 0.067943
13:39530102-T-C 13 39530102 T C C Heilongjiang 124 1818 0.068207 Northeast Han 346 4826 0.071695
13:39530102-T-C 13 39530102 T C C Xianggang 0 4 0.0 South coast Han 845 15972 0.052905
13:39530102-T-C 13 39530102 T C C Fujian 31 562 0.05516 South coast Han 845 15972 0.052905
13:39530102-T-C 13 39530102 T C C Anhui 260 3608 0.072062 Southeast Han 3113 45818 0.067943
13:39530102-T-C 13 39530102 T C C Xinjiang 15 168 0.089286 Northwest Han 579 9502 0.060935
13:39530102-T-C 13 39530102 T C C Xizang 0 2 0.0 Southwest Han 384 6402 0.059981
13:39530102-T-C 13 39530102 T C C Guizhou 4 48 0.083333 Southwest Han 384 6402 0.059981
13:39530102-T-C 13 39530102 T C C Yunnan 8 224 0.035714 Southwest Han 384 6402 0.059981
13:39530102-T-C 13 39530102 T C C Shanghai 1132 17436 0.064923 Southeast Han 3113 45818 0.067943
13:39530102-T-C 13 39530102 T C C Chongqing 66 1056 0.0625 Southwest Han 384 6402 0.059981
13:39530102-T-C 13 39530102 T C C Jilin 59 836 0.070574 Northeast Han 346 4826 0.071695
13:39530102-T-C 13 39530102 T C C Shanxi 128 2104 0.060837 Central Han 1729 27126 0.06374
13:39530102-T-C 13 39530102 T C C Neimenggu 5 50 0.1 Northwest Han 579 9502 0.060935
13:39530102-T-C 13 39530102 T C C Qinghai 0 2 0.0 Northwest Han 579 9502 0.060935
13:39530102-T-C 13 39530102 T C C Gansu 24 324 0.074074 Northwest Han 579 9502 0.060935
13:39530102-T-C 13 39530102 T C C Singapore 395 7004 0.056396 South coast Han 845 15972 0.052905
13:39530102-T-C 13 39530102 T C C Ningxia 1 16 0.0625 Northwest Han 579 9502 0.060935

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39530102-T-C 13 39530102 T C C Southeast Han 3113 45818 0.067943
13:39530102-T-C 13 39530102 T C C Northeast Han 346 4826 0.071695
13:39530102-T-C 13 39530102 T C C Central Han 1729 27126 0.06374
13:39530102-T-C 13 39530102 T C C Southwest Han 384 6402 0.059981
13:39530102-T-C 13 39530102 T C C Northwest Han 579 9502 0.060935
13:39530102-T-C 13 39530102 T C C South coast Han 845 15972 0.052905

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.