Variant: 13:39529585-T-C
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:C
Alt. Allele:C
Alt. Allele Frequency:0.074515(8319/111642)
dbSNP:rs56744232
PGG.SNV:13:39529585-T-C

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39529585-T-C 13 39529585 T C C Sichuan 90 1464 0.061475 Southwest Han 452 6502 0.069517
13:39529585-T-C 13 39529585 T C C Shandong 330 4708 0.070093 Central Han 2041 27612 0.073917
13:39529585-T-C 13 39529585 T C C Shanghai 1340 17728 0.075587 Southeast Han 3725 46734 0.079706
13:39529585-T-C 13 39529585 T C C Guangxi 9 76 0.118421 South coast Han 1039 16284 0.063805
13:39529585-T-C 13 39529585 T C C Zhejiang 807 9846 0.081962 Southeast Han 3725 46734 0.079706
13:39529585-T-C 13 39529585 T C C Heilongjiang 137 1830 0.074863 Northeast Han 381 4858 0.078427
13:39529585-T-C 13 39529585 T C C Tianjin 72 1122 0.064171 Central Han 2041 27612 0.073917
13:39529585-T-C 13 39529585 T C C Hunan 28 406 0.068966 Southwest Han 452 6502 0.069517
13:39529585-T-C 13 39529585 T C C Liaoning 175 2182 0.080202 Northeast Han 381 4858 0.078427
13:39529585-T-C 13 39529585 T C C Beijing 1197 15432 0.077566 Central Han 2041 27612 0.073917
13:39529585-T-C 13 39529585 T C C Jiangsu 1205 14766 0.081606 Southeast Han 3725 46734 0.079706
13:39529585-T-C 13 39529585 T C C Shaanxi 632 9090 0.069527 Northwest Han 681 9652 0.070555
13:39529585-T-C 13 39529585 T C C Shanxi 150 2136 0.070225 Central Han 2041 27612 0.073917
13:39529585-T-C 13 39529585 T C C Jiangxi 61 708 0.086158 Southeast Han 3725 46734 0.079706
13:39529585-T-C 13 39529585 T C C Fujian 33 562 0.058719 South coast Han 1039 16284 0.063805
13:39529585-T-C 13 39529585 T C C Neimenggu 4 48 0.083333 Northwest Han 681 9652 0.070555
13:39529585-T-C 13 39529585 T C C Gansu 27 324 0.083333 Northwest Han 681 9652 0.070555
13:39529585-T-C 13 39529585 T C C Anhui 312 3686 0.084645 Southeast Han 3725 46734 0.079706
13:39529585-T-C 13 39529585 T C C Guangdong 109 1784 0.061099 South coast Han 1039 16284 0.063805
13:39529585-T-C 13 39529585 T C C Chongqing 84 1082 0.077634 Southwest Han 452 6502 0.069517
13:39529585-T-C 13 39529585 T C C Xizang 0 2 0.0 Southwest Han 452 6502 0.069517
13:39529585-T-C 13 39529585 T C C Henan 158 2062 0.076625 Central Han 2041 27612 0.073917
13:39529585-T-C 13 39529585 T C C Hebei 134 2152 0.062268 Central Han 2041 27612 0.073917
13:39529585-T-C 13 39529585 T C C Xinjiang 17 172 0.098837 Northwest Han 681 9652 0.070555
13:39529585-T-C 13 39529585 T C C Hainan 0 14 0.0 South coast Han 1039 16284 0.063805
13:39529585-T-C 13 39529585 T C C Singapore 537 7250 0.074069 South coast Han 1039 16284 0.063805
13:39529585-T-C 13 39529585 T C C Qinghai 0 2 0.0 Northwest Han 681 9652 0.070555
13:39529585-T-C 13 39529585 T C C Xianggang 0 4 0.0 South coast Han 1039 16284 0.063805
13:39529585-T-C 13 39529585 T C C Jilin 69 846 0.08156 Northeast Han 381 4858 0.078427
13:39529585-T-C 13 39529585 T C C Hubei 237 3276 0.072344 Southwest Han 452 6502 0.069517
13:39529585-T-C 13 39529585 T C C Guizhou 3 46 0.065217 Southwest Han 452 6502 0.069517
13:39529585-T-C 13 39529585 T C C Yunnan 10 226 0.044248 Southwest Han 452 6502 0.069517
13:39529585-T-C 13 39529585 T C C Ningxia 1 16 0.0625 Northwest Han 681 9652 0.070555

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39529585-T-C 13 39529585 T C C Southwest Han 452 6502 0.069517
13:39529585-T-C 13 39529585 T C C Central Han 2041 27612 0.073917
13:39529585-T-C 13 39529585 T C C Southeast Han 3725 46734 0.079706
13:39529585-T-C 13 39529585 T C C South coast Han 1039 16284 0.063805
13:39529585-T-C 13 39529585 T C C Northeast Han 381 4858 0.078427
13:39529585-T-C 13 39529585 T C C Northwest Han 681 9652 0.070555

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.