Variant: 13:39529089-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:C
Alt. Allele:T
Alt. Allele Frequency:0.921838(103397/112164)
dbSNP:rs4420397
PGG.SNV:13:39529089-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39529089-C-T 13 39529089 C C T Shanghai 16405 17836 0.919769 Southeast Han 43021 46904 0.917214
13:39529089-C-T 13 39529089 C C T Shaanxi 8478 9142 0.927368 Northwest Han 8991 9706 0.926334
13:39529089-C-T 13 39529089 C C T Hunan 378 406 0.931034 Southwest Han 6054 6534 0.926538
13:39529089-C-T 13 39529089 C C T Sichuan 1378 1474 0.934871 Southwest Han 6054 6534 0.926538
13:39529089-C-T 13 39529089 C C T Jiangsu 13558 14792 0.916577 Southeast Han 43021 46904 0.917214
13:39529089-C-T 13 39529089 C C T Henan 1896 2066 0.917715 Central Han 25593 27740 0.922603
13:39529089-C-T 13 39529089 C C T Heilongjiang 1690 1838 0.919478 Northeast Han 4463 4866 0.91718
13:39529089-C-T 13 39529089 C C T Shandong 4381 4732 0.925824 Central Han 25593 27740 0.922603
13:39529089-C-T 13 39529089 C C T Hebei 2020 2170 0.930876 Central Han 25593 27740 0.922603
13:39529089-C-T 13 39529089 C C T Beijing 14248 15472 0.920889 Central Han 25593 27740 0.922603
13:39529089-C-T 13 39529089 C C T Liaoning 1997 2182 0.915215 Northeast Han 4463 4866 0.91718
13:39529089-C-T 13 39529089 C C T Hubei 3038 3286 0.924528 Southwest Han 6054 6534 0.926538
13:39529089-C-T 13 39529089 C C T Guangdong 1662 1784 0.931614 South coast Han 15275 16414 0.930608
13:39529089-C-T 13 39529089 C C T Fujian 534 572 0.933566 South coast Han 15275 16414 0.930608
13:39529089-C-T 13 39529089 C C T Zhejiang 9039 9876 0.915249 Southeast Han 43021 46904 0.917214
13:39529089-C-T 13 39529089 C C T Tianjin 1055 1138 0.927065 Central Han 25593 27740 0.922603
13:39529089-C-T 13 39529089 C C T Xizang 2 2 1.0 Southwest Han 6054 6534 0.926538
13:39529089-C-T 13 39529089 C C T Chongqing 997 1090 0.914679 Southwest Han 6054 6534 0.926538
13:39529089-C-T 13 39529089 C C T Qinghai 2 2 1.0 Northwest Han 8991 9706 0.926334
13:39529089-C-T 13 39529089 C C T Hainan 14 14 1.0 South coast Han 15275 16414 0.930608
13:39529089-C-T 13 39529089 C C T Ningxia 15 16 0.9375 Northwest Han 8991 9706 0.926334
13:39529089-C-T 13 39529089 C C T Gansu 296 324 0.91358 Northwest Han 8991 9706 0.926334
13:39529089-C-T 13 39529089 C C T Yunnan 217 228 0.951754 Southwest Han 6054 6534 0.926538
13:39529089-C-T 13 39529089 C C T Jilin 776 846 0.917258 Northeast Han 4463 4866 0.91718
13:39529089-C-T 13 39529089 C C T Guangxi 67 76 0.881579 South coast Han 15275 16414 0.930608
13:39529089-C-T 13 39529089 C C T Xianggang 4 4 1.0 South coast Han 15275 16414 0.930608
13:39529089-C-T 13 39529089 C C T Guizhou 44 48 0.916667 Southwest Han 6054 6534 0.926538
13:39529089-C-T 13 39529089 C C T Neimenggu 45 50 0.9 Northwest Han 8991 9706 0.926334
13:39529089-C-T 13 39529089 C C T Jiangxi 644 710 0.907042 Southeast Han 43021 46904 0.917214
13:39529089-C-T 13 39529089 C C T Singapore 6708 7254 0.924731 South coast Han 15275 16414 0.930608
13:39529089-C-T 13 39529089 C C T Shanxi 1993 2162 0.921832 Central Han 25593 27740 0.922603
13:39529089-C-T 13 39529089 C C T Anhui 3375 3690 0.914634 Southeast Han 43021 46904 0.917214
13:39529089-C-T 13 39529089 C C T Xinjiang 155 172 0.901163 Northwest Han 8991 9706 0.926334

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39529089-C-T 13 39529089 C C T Southeast Han 43021 46904 0.917214
13:39529089-C-T 13 39529089 C C T Northwest Han 8991 9706 0.926334
13:39529089-C-T 13 39529089 C C T Southwest Han 6054 6534 0.926538
13:39529089-C-T 13 39529089 C C T Central Han 25593 27740 0.922603
13:39529089-C-T 13 39529089 C C T Northeast Han 4463 4866 0.91718
13:39529089-C-T 13 39529089 C C T South coast Han 15275 16414 0.930608

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.