Variant: 13:39529089-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:C
Alt. Allele:T
Alt. Allele Frequency:0.079115(8343/105454)
dbSNP:rs4420397
PGG.SNV:13:39529089-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39529089-C-T 13 39529089 C C T Shanghai 1431 17836 0.080231 Southeast Han 3883 46904 0.082786
13:39529089-C-T 13 39529089 C C T Heilongjiang 148 1838 0.080522 Northeast Han 403 4866 0.08282
13:39529089-C-T 13 39529089 C C T Anhui 315 3690 0.085366 Southeast Han 3883 46904 0.082786
13:39529089-C-T 13 39529089 C C T Beijing 1224 15472 0.079111 Central Han 2147 27740 0.077397
13:39529089-C-T 13 39529089 C C T Hubei 248 3286 0.075472 Southwest Han 480 6534 0.073462
13:39529089-C-T 13 39529089 C C T Guangdong 122 1784 0.068386 South coast Han 715 9704 0.073681
13:39529089-C-T 13 39529089 C C T Shaanxi 664 9142 0.072632 Northwest Han 715 9706 0.073666
13:39529089-C-T 13 39529089 C C T Tianjin 83 1138 0.072935 Central Han 2147 27740 0.077397
13:39529089-C-T 13 39529089 C C T Gansu 28 324 0.08642 Northwest Han 715 9706 0.073666
13:39529089-C-T 13 39529089 C C T Neimenggu 5 50 0.1 Northwest Han 715 9706 0.073666
13:39529089-C-T 13 39529089 C C T Xizang 0 2 0.0 Southwest Han 480 6534 0.073462
13:39529089-C-T 13 39529089 C C T Qinghai 0 2 0.0 Northwest Han 715 9706 0.073666
13:39529089-C-T 13 39529089 C C T Henan 170 2066 0.082285 Central Han 2147 27740 0.077397
13:39529089-C-T 13 39529089 C C T Fujian 38 572 0.066434 South coast Han 715 9704 0.073681
13:39529089-C-T 13 39529089 C C T Hainan 0 14 0.0 South coast Han 715 9704 0.073681
13:39529089-C-T 13 39529089 C C T Guizhou 4 48 0.083333 Southwest Han 480 6534 0.073462
13:39529089-C-T 13 39529089 C C T Liaoning 185 2182 0.084785 Northeast Han 403 4866 0.08282
13:39529089-C-T 13 39529089 C C T Xianggang 0 4 0.0 South coast Han 715 9704 0.073681
13:39529089-C-T 13 39529089 C C T Chongqing 93 1090 0.085321 Southwest Han 480 6534 0.073462
13:39529089-C-T 13 39529089 C C T Jilin 70 846 0.082742 Northeast Han 403 4866 0.08282
13:39529089-C-T 13 39529089 C C T Jiangsu 1234 14792 0.083423 Southeast Han 3883 46904 0.082786
13:39529089-C-T 13 39529089 C C T Shandong 351 4732 0.074176 Central Han 2147 27740 0.077397
13:39529089-C-T 13 39529089 C C T Ningxia 1 16 0.0625 Northwest Han 715 9706 0.073666
13:39529089-C-T 13 39529089 C C T Yunnan 11 228 0.048246 Southwest Han 480 6534 0.073462
13:39529089-C-T 13 39529089 C C T Hunan 28 406 0.068966 Southwest Han 480 6534 0.073462
13:39529089-C-T 13 39529089 C C T Shanxi 169 2162 0.078168 Central Han 2147 27740 0.077397
13:39529089-C-T 13 39529089 C C T Guangxi 9 76 0.118421 South coast Han 715 9704 0.073681
13:39529089-C-T 13 39529089 C C T Sichuan 96 1474 0.065129 Southwest Han 480 6534 0.073462
13:39529089-C-T 13 39529089 C C T Hebei 150 2170 0.069124 Central Han 2147 27740 0.077397
13:39529089-C-T 13 39529089 C C T Zhejiang 837 9876 0.084751 Southeast Han 3883 46904 0.082786
13:39529089-C-T 13 39529089 C C T Singapore 546 7254 0.075269 South coast Han 715 9704 0.073681
13:39529089-C-T 13 39529089 C C T Xinjiang 17 172 0.098837 Northwest Han 715 9706 0.073666
13:39529089-C-T 13 39529089 C C T Jiangxi 66 710 0.092958 Southeast Han 3883 46904 0.082786

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39529089-C-T 13 39529089 C C T Southeast Han 3883 46904 0.082786
13:39529089-C-T 13 39529089 C C T Northeast Han 403 4866 0.08282
13:39529089-C-T 13 39529089 C C T Central Han 2147 27740 0.077397
13:39529089-C-T 13 39529089 C C T Southwest Han 480 6534 0.073462
13:39529089-C-T 13 39529089 C C T South coast Han 715 9704 0.073681
13:39529089-C-T 13 39529089 C C T Northwest Han 715 9706 0.073666

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.