Variant: 13:39528784-T-C
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:T
Alt. Allele:C
Alt. Allele Frequency:0.077568(8687/111992)
dbSNP:rs57209445
PGG.SNV:13:39528784-T-C

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39528784-T-C 13 39528784 T T C Heilongjiang 147 1836 0.080065 Northeast Han 403 4864 0.082854
13:39528784-T-C 13 39528784 T T C Shaanxi 665 9138 0.072773 Northwest Han 716 9702 0.073799
13:39528784-T-C 13 39528784 T T C Jiangsu 1221 14770 0.082668 Southeast Han 3841 46826 0.082027
13:39528784-T-C 13 39528784 T T C Jilin 71 846 0.083924 Northeast Han 403 4864 0.082854
13:39528784-T-C 13 39528784 T T C Neimenggu 5 50 0.1 Northwest Han 716 9702 0.073799
13:39528784-T-C 13 39528784 T T C Shandong 346 4722 0.073274 Central Han 2129 27700 0.076859
13:39528784-T-C 13 39528784 T T C Anhui 313 3686 0.084916 Southeast Han 3841 46826 0.082027
13:39528784-T-C 13 39528784 T T C Xinjiang 17 172 0.098837 Northwest Han 716 9702 0.073799
13:39528784-T-C 13 39528784 T T C Singapore 531 7222 0.073525 South coast Han 1119 16366 0.068373
13:39528784-T-C 13 39528784 T T C Hubei 247 3286 0.075167 Southwest Han 479 6534 0.073309
13:39528784-T-C 13 39528784 T T C Sichuan 97 1474 0.065807 Southwest Han 479 6534 0.073309
13:39528784-T-C 13 39528784 T T C Xianggang 0 4 0.0 South coast Han 1119 16366 0.068373
13:39528784-T-C 13 39528784 T T C Gansu 28 324 0.08642 Northwest Han 716 9702 0.073799
13:39528784-T-C 13 39528784 T T C Guizhou 4 48 0.083333 Southwest Han 479 6534 0.073309
13:39528784-T-C 13 39528784 T T C Chongqing 92 1090 0.084404 Southwest Han 479 6534 0.073309
13:39528784-T-C 13 39528784 T T C Shanxi 169 2162 0.078168 Central Han 2129 27700 0.076859
13:39528784-T-C 13 39528784 T T C Guangxi 9 76 0.118421 South coast Han 1119 16366 0.068373
13:39528784-T-C 13 39528784 T T C Hainan 0 14 0.0 South coast Han 1119 16366 0.068373
13:39528784-T-C 13 39528784 T T C Shanghai 1415 17798 0.079503 Southeast Han 3841 46826 0.082027
13:39528784-T-C 13 39528784 T T C Hebei 150 2170 0.069124 Central Han 2129 27700 0.076859
13:39528784-T-C 13 39528784 T T C Jiangxi 65 710 0.091549 Southeast Han 3841 46826 0.082027
13:39528784-T-C 13 39528784 T T C Hunan 28 406 0.068966 Southwest Han 479 6534 0.073309
13:39528784-T-C 13 39528784 T T C Fujian 37 570 0.064912 South coast Han 1119 16366 0.068373
13:39528784-T-C 13 39528784 T T C Zhejiang 827 9862 0.083857 Southeast Han 3841 46826 0.082027
13:39528784-T-C 13 39528784 T T C Beijing 1211 15444 0.078412 Central Han 2129 27700 0.076859
13:39528784-T-C 13 39528784 T T C Guangdong 121 1784 0.067825 South coast Han 1119 16366 0.068373
13:39528784-T-C 13 39528784 T T C Henan 170 2064 0.082364 Central Han 2129 27700 0.076859
13:39528784-T-C 13 39528784 T T C Liaoning 185 2182 0.084785 Northeast Han 403 4864 0.082854
13:39528784-T-C 13 39528784 T T C Yunnan 11 228 0.048246 Southwest Han 479 6534 0.073309
13:39528784-T-C 13 39528784 T T C Ningxia 1 16 0.0625 Northwest Han 716 9702 0.073799
13:39528784-T-C 13 39528784 T T C Qinghai 0 2 0.0 Northwest Han 716 9702 0.073799
13:39528784-T-C 13 39528784 T T C Tianjin 83 1138 0.072935 Central Han 2129 27700 0.076859
13:39528784-T-C 13 39528784 T T C Xizang 0 2 0.0 Southwest Han 479 6534 0.073309

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39528784-T-C 13 39528784 T T C Northeast Han 403 4864 0.082854
13:39528784-T-C 13 39528784 T T C Northwest Han 716 9702 0.073799
13:39528784-T-C 13 39528784 T T C Southeast Han 3841 46826 0.082027
13:39528784-T-C 13 39528784 T T C Central Han 2129 27700 0.076859
13:39528784-T-C 13 39528784 T T C South coast Han 1119 16366 0.068373
13:39528784-T-C 13 39528784 T T C Southwest Han 479 6534 0.073309

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.