Variant: 13:39528357-T-A
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:A
Alt. Allele:A
Alt. Allele Frequency:0.078315(8239/105204)
dbSNP:rs56941051
PGG.SNV:13:39528357-T-A

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39528357-T-A 13 39528357 T A A Sichuan 96 1472 0.065217 Southwest Han 475 6522 0.07283
13:39528357-T-A 13 39528357 T A A Heilongjiang 144 1834 0.078517 Northeast Han 397 4858 0.081721
13:39528357-T-A 13 39528357 T A A Xizang 0 2 0.0 Southwest Han 475 6522 0.07283
13:39528357-T-A 13 39528357 T A A Chongqing 93 1092 0.085165 Southwest Han 475 6522 0.07283
13:39528357-T-A 13 39528357 T A A Henan 168 2056 0.081712 Central Han 2125 27688 0.076748
13:39528357-T-A 13 39528357 T A A Ningxia 1 16 0.0625 Northwest Han 706 9678 0.072949
13:39528357-T-A 13 39528357 T A A Jilin 68 844 0.080569 Northeast Han 397 4858 0.081721
13:39528357-T-A 13 39528357 T A A Hainan 0 14 0.0 South coast Han 694 9652 0.071902
13:39528357-T-A 13 39528357 T A A Hunan 28 406 0.068966 Southwest Han 475 6522 0.07283
13:39528357-T-A 13 39528357 T A A Jiangsu 1215 14750 0.082373 Southeast Han 3842 46806 0.082083
13:39528357-T-A 13 39528357 T A A Yunnan 11 228 0.048246 Southwest Han 475 6522 0.07283
13:39528357-T-A 13 39528357 T A A Beijing 1211 15442 0.078422 Central Han 2125 27688 0.076748
13:39528357-T-A 13 39528357 T A A Xinjiang 17 172 0.098837 Northwest Han 706 9678 0.072949
13:39528357-T-A 13 39528357 T A A Guangxi 9 76 0.118421 South coast Han 694 9652 0.071902
13:39528357-T-A 13 39528357 T A A Jiangxi 65 710 0.091549 Southeast Han 3842 46806 0.082083
13:39528357-T-A 13 39528357 T A A Tianjin 83 1138 0.072935 Central Han 2125 27688 0.076748
13:39528357-T-A 13 39528357 T A A Guizhou 4 48 0.083333 Southwest Han 475 6522 0.07283
13:39528357-T-A 13 39528357 T A A Zhejiang 831 9862 0.084263 Southeast Han 3842 46806 0.082083
13:39528357-T-A 13 39528357 T A A Guangdong 121 1782 0.067901 South coast Han 694 9652 0.071902
13:39528357-T-A 13 39528357 T A A Hubei 243 3274 0.074221 Southwest Han 475 6522 0.07283
13:39528357-T-A 13 39528357 T A A Fujian 37 570 0.064912 South coast Han 694 9652 0.071902
13:39528357-T-A 13 39528357 T A A Shanghai 1418 17798 0.079672 Southeast Han 3842 46806 0.082083
13:39528357-T-A 13 39528357 T A A Qinghai 0 2 0.0 Northwest Han 706 9678 0.072949
13:39528357-T-A 13 39528357 T A A Neimenggu 5 50 0.1 Northwest Han 706 9678 0.072949
13:39528357-T-A 13 39528357 T A A Shanxi 165 2158 0.07646 Central Han 2125 27688 0.076748
13:39528357-T-A 13 39528357 T A A Shaanxi 655 9114 0.071867 Northwest Han 706 9678 0.072949
13:39528357-T-A 13 39528357 T A A Anhui 313 3686 0.084916 Southeast Han 3842 46806 0.082083
13:39528357-T-A 13 39528357 T A A Xianggang 0 4 0.0 South coast Han 694 9652 0.071902
13:39528357-T-A 13 39528357 T A A Singapore 527 7206 0.073133 South coast Han 694 9652 0.071902
13:39528357-T-A 13 39528357 T A A Gansu 28 324 0.08642 Northwest Han 706 9678 0.072949
13:39528357-T-A 13 39528357 T A A Liaoning 185 2180 0.084862 Northeast Han 397 4858 0.081721
13:39528357-T-A 13 39528357 T A A Hebei 150 2170 0.069124 Central Han 2125 27688 0.076748
13:39528357-T-A 13 39528357 T A A Shandong 348 4724 0.073666 Central Han 2125 27688 0.076748

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39528357-T-A 13 39528357 T A A Southwest Han 475 6522 0.07283
13:39528357-T-A 13 39528357 T A A Northeast Han 397 4858 0.081721
13:39528357-T-A 13 39528357 T A A Central Han 2125 27688 0.076748
13:39528357-T-A 13 39528357 T A A Northwest Han 706 9678 0.072949
13:39528357-T-A 13 39528357 T A A South coast Han 694 9652 0.071902
13:39528357-T-A 13 39528357 T A A Southeast Han 3842 46806 0.082083

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.