Variant: 13:39528293-G-T
Variation Class:SNV (single nucleotide variation)
Reference allele:G
Ancestral allele:G
Alt. Allele:T
Alt. Allele Frequency:0.078456(8257/105244)
dbSNP:rs61478760
PGG.SNV:13:39528293-G-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39528293-G-T 13 39528293 G G T Shanxi 165 2158 0.07646 Central Han 2122 27692 0.076629
13:39528293-G-T 13 39528293 G G T Anhui 313 3686 0.084916 Southeast Han 3856 46834 0.082333
13:39528293-G-T 13 39528293 G G T Qinghai 0 2 0.0 Northwest Han 707 9678 0.073052
13:39528293-G-T 13 39528293 G G T Shaanxi 656 9114 0.071977 Northwest Han 707 9678 0.073052
13:39528293-G-T 13 39528293 G G T Henan 167 2056 0.081226 Central Han 2122 27692 0.076629
13:39528293-G-T 13 39528293 G G T Shandong 347 4724 0.073455 Central Han 2122 27692 0.076629
13:39528293-G-T 13 39528293 G G T Sichuan 96 1472 0.065217 Southwest Han 472 6516 0.072437
13:39528293-G-T 13 39528293 G G T Heilongjiang 142 1830 0.077596 Northeast Han 395 4854 0.081376
13:39528293-G-T 13 39528293 G G T Jilin 68 844 0.080569 Northeast Han 395 4854 0.081376
13:39528293-G-T 13 39528293 G G T Hainan 0 14 0.0 South coast Han 705 9670 0.072906
13:39528293-G-T 13 39528293 G G T Xianggang 0 4 0.0 South coast Han 705 9670 0.072906
13:39528293-G-T 13 39528293 G G T Guizhou 4 48 0.083333 Southwest Han 472 6516 0.072437
13:39528293-G-T 13 39528293 G G T Hunan 28 406 0.068966 Southwest Han 472 6516 0.072437
13:39528293-G-T 13 39528293 G G T Jiangxi 65 710 0.091549 Southeast Han 3856 46834 0.082333
13:39528293-G-T 13 39528293 G G T Jiangsu 1220 14758 0.082667 Southeast Han 3856 46834 0.082333
13:39528293-G-T 13 39528293 G G T Xinjiang 17 172 0.098837 Northwest Han 707 9678 0.073052
13:39528293-G-T 13 39528293 G G T Gansu 28 324 0.08642 Northwest Han 707 9678 0.073052
13:39528293-G-T 13 39528293 G G T Chongqing 92 1090 0.084404 Southwest Han 472 6516 0.072437
13:39528293-G-T 13 39528293 G G T Beijing 1216 15454 0.078685 Central Han 2122 27692 0.076629
13:39528293-G-T 13 39528293 G G T Liaoning 185 2180 0.084862 Northeast Han 395 4854 0.081376
13:39528293-G-T 13 39528293 G G T Fujian 38 572 0.066434 South coast Han 705 9670 0.072906
13:39528293-G-T 13 39528293 G G T Yunnan 11 228 0.048246 Southwest Han 472 6516 0.072437
13:39528293-G-T 13 39528293 G G T Hebei 145 2164 0.067006 Central Han 2122 27692 0.076629
13:39528293-G-T 13 39528293 G G T Guangdong 122 1782 0.068462 South coast Han 705 9670 0.072906
13:39528293-G-T 13 39528293 G G T Neimenggu 5 50 0.1 Northwest Han 707 9678 0.073052
13:39528293-G-T 13 39528293 G G T Ningxia 1 16 0.0625 Northwest Han 707 9678 0.073052
13:39528293-G-T 13 39528293 G G T Xizang 0 2 0.0 Southwest Han 472 6516 0.072437
13:39528293-G-T 13 39528293 G G T Hubei 241 3270 0.0737 Southwest Han 472 6516 0.072437
13:39528293-G-T 13 39528293 G G T Shanghai 1424 17810 0.079955 Southeast Han 3856 46834 0.082333
13:39528293-G-T 13 39528293 G G T Zhejiang 834 9870 0.084498 Southeast Han 3856 46834 0.082333
13:39528293-G-T 13 39528293 G G T Singapore 536 7222 0.074218 South coast Han 705 9670 0.072906
13:39528293-G-T 13 39528293 G G T Tianjin 82 1136 0.072183 Central Han 2122 27692 0.076629
13:39528293-G-T 13 39528293 G G T Guangxi 9 76 0.118421 South coast Han 705 9670 0.072906

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39528293-G-T 13 39528293 G G T Central Han 2122 27692 0.076629
13:39528293-G-T 13 39528293 G G T Southeast Han 3856 46834 0.082333
13:39528293-G-T 13 39528293 G G T Northwest Han 707 9678 0.073052
13:39528293-G-T 13 39528293 G G T Southwest Han 472 6516 0.072437
13:39528293-G-T 13 39528293 G G T Northeast Han 395 4854 0.081376
13:39528293-G-T 13 39528293 G G T South coast Han 705 9670 0.072906

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.