Variant: 13:39528070-T-C
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:T
Alt. Allele:C
Alt. Allele Frequency:0.071468(7436/104046)
dbSNP:rs61945527
PGG.SNV:13:39528070-T-C

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39528070-T-C 13 39528070 T T C Jiangsu 1081 14546 0.074316 Southeast Han 3441 46216 0.074455
13:39528070-T-C 13 39528070 T T C Guangdong 113 1780 0.063483 South coast Han 628 9554 0.065732
13:39528070-T-C 13 39528070 T T C Shanghai 1286 17612 0.073018 Southeast Han 3441 46216 0.074455
13:39528070-T-C 13 39528070 T T C Gansu 26 324 0.080247 Northwest Han 643 9578 0.067133
13:39528070-T-C 13 39528070 T T C Hunan 26 404 0.064356 Southwest Han 430 6456 0.066605
13:39528070-T-C 13 39528070 T T C Xizang 0 2 0.0 Southwest Han 430 6456 0.066605
13:39528070-T-C 13 39528070 T T C Shaanxi 595 9016 0.065994 Northwest Han 643 9578 0.067133
13:39528070-T-C 13 39528070 T T C Ningxia 1 16 0.0625 Northwest Han 643 9578 0.067133
13:39528070-T-C 13 39528070 T T C Guangxi 9 76 0.118421 South coast Han 628 9554 0.065732
13:39528070-T-C 13 39528070 T T C Fujian 38 572 0.066434 South coast Han 628 9554 0.065732
13:39528070-T-C 13 39528070 T T C Xinjiang 17 172 0.098837 Northwest Han 643 9578 0.067133
13:39528070-T-C 13 39528070 T T C Jiangxi 61 708 0.086158 Southeast Han 3441 46216 0.074455
13:39528070-T-C 13 39528070 T T C Zhejiang 733 9714 0.075458 Southeast Han 3441 46216 0.074455
13:39528070-T-C 13 39528070 T T C Liaoning 171 2178 0.078512 Northeast Han 362 4830 0.074948
13:39528070-T-C 13 39528070 T T C Sichuan 85 1456 0.058379 Southwest Han 430 6456 0.066605
13:39528070-T-C 13 39528070 T T C Jilin 64 840 0.07619 Northeast Han 362 4830 0.074948
13:39528070-T-C 13 39528070 T T C Guizhou 4 48 0.083333 Southwest Han 430 6456 0.066605
13:39528070-T-C 13 39528070 T T C Hainan 0 14 0.0 South coast Han 628 9554 0.065732
13:39528070-T-C 13 39528070 T T C Xianggang 0 4 0.0 South coast Han 628 9554 0.065732
13:39528070-T-C 13 39528070 T T C Yunnan 11 228 0.048246 Southwest Han 430 6456 0.066605
13:39528070-T-C 13 39528070 T T C Shanxi 149 2138 0.069691 Central Han 1932 27412 0.07048
13:39528070-T-C 13 39528070 T T C Hebei 136 2152 0.063197 Central Han 1932 27412 0.07048
13:39528070-T-C 13 39528070 T T C Neimenggu 4 48 0.083333 Northwest Han 643 9578 0.067133
13:39528070-T-C 13 39528070 T T C Anhui 280 3636 0.077008 Southeast Han 3441 46216 0.074455
13:39528070-T-C 13 39528070 T T C Hubei 217 3234 0.0671 Southwest Han 430 6456 0.066605
13:39528070-T-C 13 39528070 T T C Shandong 315 4680 0.067308 Central Han 1932 27412 0.07048
13:39528070-T-C 13 39528070 T T C Qinghai 0 2 0.0 Northwest Han 643 9578 0.067133
13:39528070-T-C 13 39528070 T T C Singapore 468 7108 0.065841 South coast Han 628 9554 0.065732
13:39528070-T-C 13 39528070 T T C Heilongjiang 127 1812 0.070088 Northeast Han 362 4830 0.074948
13:39528070-T-C 13 39528070 T T C Tianjin 75 1128 0.066489 Central Han 1932 27412 0.07048
13:39528070-T-C 13 39528070 T T C Henan 160 2054 0.077897 Central Han 1932 27412 0.07048
13:39528070-T-C 13 39528070 T T C Beijing 1097 15260 0.071887 Central Han 1932 27412 0.07048
13:39528070-T-C 13 39528070 T T C Chongqing 87 1084 0.080258 Southwest Han 430 6456 0.066605

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39528070-T-C 13 39528070 T T C Southeast Han 3441 46216 0.074455
13:39528070-T-C 13 39528070 T T C South coast Han 628 9554 0.065732
13:39528070-T-C 13 39528070 T T C Northwest Han 643 9578 0.067133
13:39528070-T-C 13 39528070 T T C Southwest Han 430 6456 0.066605
13:39528070-T-C 13 39528070 T T C Northeast Han 362 4830 0.074948
13:39528070-T-C 13 39528070 T T C Central Han 1932 27412 0.07048

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.