Variant: 13:39528083-T-A
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:T
Alt. Allele:A
Alt. Allele Frequency:0.929514(102847/110646)
dbSNP:rs34848076
PGG.SNV:13:39528083-T-A

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39528083-T-A 13 39528083 T T A Shanghai 16326 17612 0.926982 Southeast Han 42775 46216 0.925545
13:39528083-T-A 13 39528083 T T A Beijing 14163 15260 0.928113 Central Han 25480 27412 0.92952
13:39528083-T-A 13 39528083 T T A Hunan 378 404 0.935644 Southwest Han 6026 6456 0.933395
13:39528083-T-A 13 39528083 T T A Shanxi 1989 2138 0.930309 Central Han 25480 27412 0.92952
13:39528083-T-A 13 39528083 T T A Sichuan 1371 1456 0.941621 Southwest Han 6026 6456 0.933395
13:39528083-T-A 13 39528083 T T A Jiangxi 647 708 0.913842 Southeast Han 42775 46216 0.925545
13:39528083-T-A 13 39528083 T T A Shandong 4365 4680 0.932692 Central Han 25480 27412 0.92952
13:39528083-T-A 13 39528083 T T A Tianjin 1053 1128 0.933511 Central Han 25480 27412 0.92952
13:39528083-T-A 13 39528083 T T A Chongqing 997 1084 0.919742 Southwest Han 6026 6456 0.933395
13:39528083-T-A 13 39528083 T T A Liaoning 2007 2178 0.921488 Northeast Han 4468 4830 0.925052
13:39528083-T-A 13 39528083 T T A Zhejiang 8981 9714 0.924542 Southeast Han 42775 46216 0.925545
13:39528083-T-A 13 39528083 T T A Guangxi 67 76 0.881579 South coast Han 15163 16154 0.938653
13:39528083-T-A 13 39528083 T T A Shaanxi 8421 9016 0.934006 Northwest Han 8935 9578 0.932867
13:39528083-T-A 13 39528083 T T A Henan 1894 2054 0.922103 Central Han 25480 27412 0.92952
13:39528083-T-A 13 39528083 T T A Fujian 534 572 0.933566 South coast Han 15163 16154 0.938653
13:39528083-T-A 13 39528083 T T A Jiangsu 13465 14546 0.925684 Southeast Han 42775 46216 0.925545
13:39528083-T-A 13 39528083 T T A Hebei 2016 2152 0.936803 Central Han 25480 27412 0.92952
13:39528083-T-A 13 39528083 T T A Guangdong 1667 1780 0.936517 South coast Han 15163 16154 0.938653
13:39528083-T-A 13 39528083 T T A Heilongjiang 1685 1812 0.929912 Northeast Han 4468 4830 0.925052
13:39528083-T-A 13 39528083 T T A Hubei 3017 3234 0.9329 Southwest Han 6026 6456 0.933395
13:39528083-T-A 13 39528083 T T A Hainan 14 14 1.0 South coast Han 15163 16154 0.938653
13:39528083-T-A 13 39528083 T T A Xizang 2 2 1.0 Southwest Han 6026 6456 0.933395
13:39528083-T-A 13 39528083 T T A Jilin 776 840 0.92381 Northeast Han 4468 4830 0.925052
13:39528083-T-A 13 39528083 T T A Ningxia 15 16 0.9375 Northwest Han 8935 9578 0.932867
13:39528083-T-A 13 39528083 T T A Xinjiang 155 172 0.901163 Northwest Han 8935 9578 0.932867
13:39528083-T-A 13 39528083 T T A Xianggang 4 4 1.0 South coast Han 15163 16154 0.938653
13:39528083-T-A 13 39528083 T T A Yunnan 217 228 0.951754 Southwest Han 6026 6456 0.933395
13:39528083-T-A 13 39528083 T T A Anhui 3356 3636 0.922992 Southeast Han 42775 46216 0.925545
13:39528083-T-A 13 39528083 T T A Singapore 6640 7108 0.934159 South coast Han 15163 16154 0.938653
13:39528083-T-A 13 39528083 T T A Guizhou 44 48 0.916667 Southwest Han 6026 6456 0.933395
13:39528083-T-A 13 39528083 T T A Qinghai 2 2 1.0 Northwest Han 8935 9578 0.932867
13:39528083-T-A 13 39528083 T T A Neimenggu 44 48 0.916667 Northwest Han 8935 9578 0.932867
13:39528083-T-A 13 39528083 T T A Gansu 298 324 0.919753 Northwest Han 8935 9578 0.932867

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39528083-T-A 13 39528083 T T A Southeast Han 42775 46216 0.925545
13:39528083-T-A 13 39528083 T T A Central Han 25480 27412 0.92952
13:39528083-T-A 13 39528083 T T A Southwest Han 6026 6456 0.933395
13:39528083-T-A 13 39528083 T T A Northeast Han 4468 4830 0.925052
13:39528083-T-A 13 39528083 T T A South coast Han 15163 16154 0.938653
13:39528083-T-A 13 39528083 T T A Northwest Han 8935 9578 0.932867

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.