Variant: 13:39527359-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:C
Alt. Allele:T
Alt. Allele Frequency:0.923098(103171/111766)
dbSNP:rs9603484
PGG.SNV:13:39527359-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39527359-C-T 13 39527359 C C T Liaoning 1995 2178 0.915978 Northeast Han 4458 4852 0.918796
13:39527359-C-T 13 39527359 C C T Zhejiang 9022 9850 0.915939 Southeast Han 42949 46764 0.91842
13:39527359-C-T 13 39527359 C C T Sichuan 1375 1468 0.936649 Southwest Han 6040 6512 0.927518
13:39527359-C-T 13 39527359 C C T Shandong 4373 4720 0.926483 Central Han 25555 27668 0.92363
13:39527359-C-T 13 39527359 C C T Hunan 378 406 0.931034 Southwest Han 6040 6512 0.927518
13:39527359-C-T 13 39527359 C C T Henan 1895 2062 0.919011 Central Han 25555 27668 0.92363
13:39527359-C-T 13 39527359 C C T Shaanxi 8446 9090 0.929153 Northwest Han 8958 9652 0.928098
13:39527359-C-T 13 39527359 C C T Beijing 14229 15434 0.921926 Central Han 25555 27668 0.92363
13:39527359-C-T 13 39527359 C C T Guangxi 67 76 0.881579 South coast Han 15211 16318 0.932161
13:39527359-C-T 13 39527359 C C T Hebei 2017 2168 0.930351 Central Han 25555 27668 0.92363
13:39527359-C-T 13 39527359 C C T Gansu 295 322 0.916149 Northwest Han 8958 9652 0.928098
13:39527359-C-T 13 39527359 C C T Shanghai 16382 17780 0.921372 Southeast Han 42949 46764 0.91842
13:39527359-C-T 13 39527359 C C T Shanxi 1989 2152 0.924257 Central Han 25555 27668 0.92363
13:39527359-C-T 13 39527359 C C T Hainan 14 14 1.0 South coast Han 15211 16318 0.932161
13:39527359-C-T 13 39527359 C C T Anhui 3372 3684 0.915309 Southeast Han 42949 46764 0.91842
13:39527359-C-T 13 39527359 C C T Xinjiang 155 172 0.901163 Northwest Han 8958 9652 0.928098
13:39527359-C-T 13 39527359 C C T Chongqing 994 1086 0.915285 Southwest Han 6040 6512 0.927518
13:39527359-C-T 13 39527359 C C T Qinghai 2 2 1.0 Northwest Han 8958 9652 0.928098
13:39527359-C-T 13 39527359 C C T Neimenggu 45 50 0.9 Northwest Han 8958 9652 0.928098
13:39527359-C-T 13 39527359 C C T Ningxia 15 16 0.9375 Northwest Han 8958 9652 0.928098
13:39527359-C-T 13 39527359 C C T Heilongjiang 1690 1834 0.921483 Northeast Han 4458 4852 0.918796
13:39527359-C-T 13 39527359 C C T Tianjin 1052 1132 0.929329 Central Han 25555 27668 0.92363
13:39527359-C-T 13 39527359 C C T Yunnan 218 228 0.95614 Southwest Han 6040 6512 0.927518
13:39527359-C-T 13 39527359 C C T Fujian 533 570 0.935088 South coast Han 15211 16318 0.932161
13:39527359-C-T 13 39527359 C C T Singapore 6685 7214 0.92667 South coast Han 15211 16318 0.932161
13:39527359-C-T 13 39527359 C C T Guizhou 44 48 0.916667 Southwest Han 6040 6512 0.927518
13:39527359-C-T 13 39527359 C C T Guangdong 1663 1782 0.933221 South coast Han 15211 16318 0.932161
13:39527359-C-T 13 39527359 C C T Jiangsu 13528 14740 0.917775 Southeast Han 42949 46764 0.91842
13:39527359-C-T 13 39527359 C C T Jilin 773 840 0.920238 Northeast Han 4458 4852 0.918796
13:39527359-C-T 13 39527359 C C T Jiangxi 645 710 0.908451 Southeast Han 42949 46764 0.91842
13:39527359-C-T 13 39527359 C C T Xizang 2 2 1.0 Southwest Han 6040 6512 0.927518
13:39527359-C-T 13 39527359 C C T Xianggang 4 4 1.0 South coast Han 15211 16318 0.932161
13:39527359-C-T 13 39527359 C C T Hubei 3029 3274 0.925168 Southwest Han 6040 6512 0.927518

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39527359-C-T 13 39527359 C C T Northeast Han 4458 4852 0.918796
13:39527359-C-T 13 39527359 C C T Southeast Han 42949 46764 0.91842
13:39527359-C-T 13 39527359 C C T Southwest Han 6040 6512 0.927518
13:39527359-C-T 13 39527359 C C T Central Han 25555 27668 0.92363
13:39527359-C-T 13 39527359 C C T Northwest Han 8958 9652 0.928098
13:39527359-C-T 13 39527359 C C T South coast Han 15211 16318 0.932161

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.