Variant: 13:39527359-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:C
Alt. Allele:T
Alt. Allele Frequency:0.077844(8182/105108)
dbSNP:rs9603484
PGG.SNV:13:39527359-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39527359-C-T 13 39527359 C C T Liaoning 183 2178 0.084022 Northeast Han 394 4852 0.081204
13:39527359-C-T 13 39527359 C C T Guangxi 9 76 0.118421 South coast Han 694 9660 0.071843
13:39527359-C-T 13 39527359 C C T Beijing 1205 15434 0.078074 Central Han 2113 27668 0.07637
13:39527359-C-T 13 39527359 C C T Shanghai 1398 17780 0.078628 Southeast Han 3815 46764 0.08158
13:39527359-C-T 13 39527359 C C T Chongqing 92 1086 0.084715 Southwest Han 472 6512 0.072482
13:39527359-C-T 13 39527359 C C T Shandong 347 4720 0.073517 Central Han 2113 27668 0.07637
13:39527359-C-T 13 39527359 C C T Shaanxi 644 9090 0.070847 Northwest Han 694 9652 0.071902
13:39527359-C-T 13 39527359 C C T Shanxi 163 2152 0.075743 Central Han 2113 27668 0.07637
13:39527359-C-T 13 39527359 C C T Sichuan 93 1468 0.063351 Southwest Han 472 6512 0.072482
13:39527359-C-T 13 39527359 C C T Gansu 27 322 0.083851 Northwest Han 694 9652 0.071902
13:39527359-C-T 13 39527359 C C T Hainan 0 14 0.0 South coast Han 694 9660 0.071843
13:39527359-C-T 13 39527359 C C T Xinjiang 17 172 0.098837 Northwest Han 694 9652 0.071902
13:39527359-C-T 13 39527359 C C T Zhejiang 828 9850 0.084061 Southeast Han 3815 46764 0.08158
13:39527359-C-T 13 39527359 C C T Henan 167 2062 0.080989 Central Han 2113 27668 0.07637
13:39527359-C-T 13 39527359 C C T Hunan 28 406 0.068966 Southwest Han 472 6512 0.072482
13:39527359-C-T 13 39527359 C C T Anhui 312 3684 0.084691 Southeast Han 3815 46764 0.08158
13:39527359-C-T 13 39527359 C C T Hebei 151 2168 0.069649 Central Han 2113 27668 0.07637
13:39527359-C-T 13 39527359 C C T Tianjin 80 1132 0.070671 Central Han 2113 27668 0.07637
13:39527359-C-T 13 39527359 C C T Fujian 37 570 0.064912 South coast Han 694 9660 0.071843
13:39527359-C-T 13 39527359 C C T Qinghai 0 2 0.0 Northwest Han 694 9652 0.071902
13:39527359-C-T 13 39527359 C C T Heilongjiang 144 1834 0.078517 Northeast Han 394 4852 0.081204
13:39527359-C-T 13 39527359 C C T Singapore 529 7214 0.07333 South coast Han 694 9660 0.071843
13:39527359-C-T 13 39527359 C C T Xianggang 0 4 0.0 South coast Han 694 9660 0.071843
13:39527359-C-T 13 39527359 C C T Yunnan 10 228 0.04386 Southwest Han 472 6512 0.072482
13:39527359-C-T 13 39527359 C C T Jilin 67 840 0.079762 Northeast Han 394 4852 0.081204
13:39527359-C-T 13 39527359 C C T Guizhou 4 48 0.083333 Southwest Han 472 6512 0.072482
13:39527359-C-T 13 39527359 C C T Jiangxi 65 710 0.091549 Southeast Han 3815 46764 0.08158
13:39527359-C-T 13 39527359 C C T Neimenggu 5 50 0.1 Northwest Han 694 9652 0.071902
13:39527359-C-T 13 39527359 C C T Jiangsu 1212 14740 0.082225 Southeast Han 3815 46764 0.08158
13:39527359-C-T 13 39527359 C C T Ningxia 1 16 0.0625 Northwest Han 694 9652 0.071902
13:39527359-C-T 13 39527359 C C T Xizang 0 2 0.0 Southwest Han 472 6512 0.072482
13:39527359-C-T 13 39527359 C C T Guangdong 119 1782 0.066779 South coast Han 694 9660 0.071843
13:39527359-C-T 13 39527359 C C T Hubei 245 3274 0.074832 Southwest Han 472 6512 0.072482

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39527359-C-T 13 39527359 C C T Northeast Han 394 4852 0.081204
13:39527359-C-T 13 39527359 C C T South coast Han 694 9660 0.071843
13:39527359-C-T 13 39527359 C C T Central Han 2113 27668 0.07637
13:39527359-C-T 13 39527359 C C T Southeast Han 3815 46764 0.08158
13:39527359-C-T 13 39527359 C C T Southwest Han 472 6512 0.072482
13:39527359-C-T 13 39527359 C C T Northwest Han 694 9652 0.071902

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.