Variant: 13:39528144-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:T
Alt. Allele:T
Alt. Allele Frequency:0.076282(8000/104874)
dbSNP:rs61945529
PGG.SNV:13:39528144-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39528144-C-T 13 39528144 C T T Guizhou 4 48 0.083333 Southwest Han 468 6512 0.071867
13:39528144-C-T 13 39528144 C T T Gansu 27 324 0.083333 Northwest Han 690 9646 0.071532
13:39528144-C-T 13 39528144 C T T Yunnan 11 228 0.048246 Southwest Han 468 6512 0.071867
13:39528144-C-T 13 39528144 C T T Xianggang 0 4 0.0 South coast Han 691 9648 0.071621
13:39528144-C-T 13 39528144 C T T Ningxia 1 16 0.0625 Northwest Han 690 9646 0.071532
13:39528144-C-T 13 39528144 C T T Guangdong 120 1782 0.06734 South coast Han 691 9648 0.071621
13:39528144-C-T 13 39528144 C T T Singapore 524 7200 0.072778 South coast Han 691 9648 0.071621
13:39528144-C-T 13 39528144 C T T Qinghai 0 2 0.0 Northwest Han 690 9646 0.071532
13:39528144-C-T 13 39528144 C T T Jiangsu 1174 14688 0.079929 Southeast Han 3720 46648 0.079746
13:39528144-C-T 13 39528144 C T T Xinjiang 17 172 0.098837 Northwest Han 690 9646 0.071532
13:39528144-C-T 13 39528144 C T T Jiangxi 64 710 0.090141 Southeast Han 3720 46648 0.079746
13:39528144-C-T 13 39528144 C T T Hainan 0 14 0.0 South coast Han 691 9648 0.071621
13:39528144-C-T 13 39528144 C T T Zhejiang 793 9808 0.080852 Southeast Han 3720 46648 0.079746
13:39528144-C-T 13 39528144 C T T Jilin 68 842 0.08076 Northeast Han 387 4846 0.07986
13:39528144-C-T 13 39528144 C T T Shandong 333 4704 0.070791 Central Han 2044 27574 0.074128
13:39528144-C-T 13 39528144 C T T Heilongjiang 138 1822 0.075741 Northeast Han 387 4846 0.07986
13:39528144-C-T 13 39528144 C T T Guangxi 9 76 0.118421 South coast Han 691 9648 0.071621
13:39528144-C-T 13 39528144 C T T Henan 166 2058 0.080661 Central Han 2044 27574 0.074128
13:39528144-C-T 13 39528144 C T T Beijing 1167 15372 0.075917 Central Han 2044 27574 0.074128
13:39528144-C-T 13 39528144 C T T Liaoning 181 2182 0.082951 Northeast Han 387 4846 0.07986
13:39528144-C-T 13 39528144 C T T Neimenggu 5 50 0.1 Northwest Han 690 9646 0.071532
13:39528144-C-T 13 39528144 C T T Shaanxi 640 9082 0.070469 Northwest Han 690 9646 0.071532
13:39528144-C-T 13 39528144 C T T Hubei 240 3268 0.073439 Southwest Han 468 6512 0.071867
13:39528144-C-T 13 39528144 C T T Fujian 38 572 0.066434 South coast Han 691 9648 0.071621
13:39528144-C-T 13 39528144 C T T Tianjin 79 1134 0.069665 Central Han 2044 27574 0.074128
13:39528144-C-T 13 39528144 C T T Hebei 143 2162 0.066142 Central Han 2044 27574 0.074128
13:39528144-C-T 13 39528144 C T T Hunan 28 406 0.068966 Southwest Han 468 6512 0.071867
13:39528144-C-T 13 39528144 C T T Shanghai 1389 17770 0.078165 Southeast Han 3720 46648 0.079746
13:39528144-C-T 13 39528144 C T T Xizang 0 2 0.0 Southwest Han 468 6512 0.071867
13:39528144-C-T 13 39528144 C T T Chongqing 92 1092 0.084249 Southwest Han 468 6512 0.071867
13:39528144-C-T 13 39528144 C T T Anhui 300 3672 0.081699 Southeast Han 3720 46648 0.079746
13:39528144-C-T 13 39528144 C T T Shanxi 156 2144 0.072761 Central Han 2044 27574 0.074128
13:39528144-C-T 13 39528144 C T T Sichuan 93 1468 0.063351 Southwest Han 468 6512 0.071867

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39528144-C-T 13 39528144 C T T Southwest Han 468 6512 0.071867
13:39528144-C-T 13 39528144 C T T Northwest Han 690 9646 0.071532
13:39528144-C-T 13 39528144 C T T South coast Han 691 9648 0.071621
13:39528144-C-T 13 39528144 C T T Southeast Han 3720 46648 0.079746
13:39528144-C-T 13 39528144 C T T Northeast Han 387 4846 0.07986
13:39528144-C-T 13 39528144 C T T Central Han 2044 27574 0.074128

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.