Variant: 13:39527473-A-G
Variation Class:SNV (single nucleotide variation)
Reference allele:A
Ancestral allele:G
Alt. Allele:G
Alt. Allele Frequency:0.077947(8195/105136)
dbSNP:rs9603485
PGG.SNV:13:39527473-A-G

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39527473-A-G 13 39527473 A G G Jiangsu 1207 14738 0.081897 Southeast Han 3823 46788 0.081709
13:39527473-A-G 13 39527473 A G G Zhejiang 818 9852 0.083029 Southeast Han 3823 46788 0.081709
13:39527473-A-G 13 39527473 A G G Shandong 347 4722 0.073486 Central Han 2125 27688 0.076748
13:39527473-A-G 13 39527473 A G G Guangdong 118 1782 0.066218 South coast Han 686 9642 0.071147
13:39527473-A-G 13 39527473 A G G Shanghai 1419 17802 0.07971 Southeast Han 3823 46788 0.081709
13:39527473-A-G 13 39527473 A G G Beijing 1216 15448 0.078716 Central Han 2125 27688 0.076748
13:39527473-A-G 13 39527473 A G G Hunan 28 406 0.068966 Southwest Han 469 6504 0.072109
13:39527473-A-G 13 39527473 A G G Shaanxi 649 9100 0.071319 Northwest Han 699 9664 0.07233
13:39527473-A-G 13 39527473 A G G Heilongjiang 141 1826 0.077218 Northeast Han 393 4850 0.081031
13:39527473-A-G 13 39527473 A G G Hebei 150 2168 0.069188 Central Han 2125 27688 0.076748
13:39527473-A-G 13 39527473 A G G Chongqing 92 1086 0.084715 Southwest Han 469 6504 0.072109
13:39527473-A-G 13 39527473 A G G Guangxi 9 76 0.118421 South coast Han 686 9642 0.071147
13:39527473-A-G 13 39527473 A G G Liaoning 184 2182 0.084326 Northeast Han 393 4850 0.081031
13:39527473-A-G 13 39527473 A G G Sichuan 92 1466 0.062756 Southwest Han 469 6504 0.072109
13:39527473-A-G 13 39527473 A G G Jiangxi 66 710 0.092958 Southeast Han 3823 46788 0.081709
13:39527473-A-G 13 39527473 A G G Henan 170 2064 0.082364 Central Han 2125 27688 0.076748
13:39527473-A-G 13 39527473 A G G Tianjin 80 1132 0.070671 Central Han 2125 27688 0.076748
13:39527473-A-G 13 39527473 A G G Singapore 522 7196 0.07254 South coast Han 686 9642 0.071147
13:39527473-A-G 13 39527473 A G G Xizang 0 2 0.0 Southwest Han 469 6504 0.072109
13:39527473-A-G 13 39527473 A G G Neimenggu 5 50 0.1 Northwest Han 699 9664 0.07233
13:39527473-A-G 13 39527473 A G G Anhui 313 3686 0.084916 Southeast Han 3823 46788 0.081709
13:39527473-A-G 13 39527473 A G G Fujian 37 570 0.064912 South coast Han 686 9642 0.071147
13:39527473-A-G 13 39527473 A G G Xinjiang 17 172 0.098837 Northwest Han 699 9664 0.07233
13:39527473-A-G 13 39527473 A G G Ningxia 1 16 0.0625 Northwest Han 699 9664 0.07233
13:39527473-A-G 13 39527473 A G G Qinghai 0 2 0.0 Northwest Han 699 9664 0.07233
13:39527473-A-G 13 39527473 A G G Guizhou 4 48 0.083333 Southwest Han 469 6504 0.072109
13:39527473-A-G 13 39527473 A G G Gansu 27 324 0.083333 Northwest Han 699 9664 0.07233
13:39527473-A-G 13 39527473 A G G Jilin 68 842 0.08076 Northeast Han 393 4850 0.081031
13:39527473-A-G 13 39527473 A G G Xianggang 0 4 0.0 South coast Han 686 9642 0.071147
13:39527473-A-G 13 39527473 A G G Yunnan 11 228 0.048246 Southwest Han 469 6504 0.072109
13:39527473-A-G 13 39527473 A G G Hainan 0 14 0.0 South coast Han 686 9642 0.071147
13:39527473-A-G 13 39527473 A G G Shanxi 162 2154 0.075209 Central Han 2125 27688 0.076748
13:39527473-A-G 13 39527473 A G G Hubei 242 3268 0.074051 Southwest Han 469 6504 0.072109

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39527473-A-G 13 39527473 A G G Southeast Han 3823 46788 0.081709
13:39527473-A-G 13 39527473 A G G Central Han 2125 27688 0.076748
13:39527473-A-G 13 39527473 A G G South coast Han 686 9642 0.071147
13:39527473-A-G 13 39527473 A G G Southwest Han 469 6504 0.072109
13:39527473-A-G 13 39527473 A G G Northwest Han 699 9664 0.07233
13:39527473-A-G 13 39527473 A G G Northeast Han 393 4850 0.081031

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.