Variant: 13:39527445-A-G
Variation Class:SNV (single nucleotide variation)
Reference allele:A
Ancestral allele:A
Alt. Allele:G
Alt. Allele Frequency:1.32E-4(14/105682)
dbSNP:rs374711638
PGG.SNV:13:39527445-A-G

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39527445-A-G 13 39527445 A A G Shanxi 0 2186 0.0 Central Han 5 27812 1.8E-4
13:39527445-A-G 13 39527445 A A G Guizhou 0 48 0.0 Southwest Han 1 6556 1.53E-4
13:39527445-A-G 13 39527445 A A G Sichuan 1 1478 6.77E-4 Southwest Han 1 6556 1.53E-4
13:39527445-A-G 13 39527445 A A G Beijing 0 15480 0.0 Central Han 5 27812 1.8E-4
13:39527445-A-G 13 39527445 A A G Hainan 0 14 0.0 South coast Han 1 9710 1.03E-4
13:39527445-A-G 13 39527445 A A G Gansu 0 324 0.0 Northwest Han 1 9724 1.03E-4
13:39527445-A-G 13 39527445 A A G Neimenggu 0 50 0.0 Northwest Han 1 9724 1.03E-4
13:39527445-A-G 13 39527445 A A G Guangdong 0 1792 0.0 South coast Han 1 9710 1.03E-4
13:39527445-A-G 13 39527445 A A G Hebei 0 2178 0.0 Central Han 5 27812 1.8E-4
13:39527445-A-G 13 39527445 A A G Hubei 0 3288 0.0 Southwest Han 1 6556 1.53E-4
13:39527445-A-G 13 39527445 A A G Shaanxi 1 9160 1.09E-4 Northwest Han 1 9724 1.03E-4
13:39527445-A-G 13 39527445 A A G Xianggang 0 4 0.0 South coast Han 1 9710 1.03E-4
13:39527445-A-G 13 39527445 A A G Ningxia 0 16 0.0 Northwest Han 1 9724 1.03E-4
13:39527445-A-G 13 39527445 A A G Fujian 0 572 0.0 South coast Han 1 9710 1.03E-4
13:39527445-A-G 13 39527445 A A G Xizang 0 2 0.0 Southwest Han 1 6556 1.53E-4
13:39527445-A-G 13 39527445 A A G Anhui 0 3690 0.0 Southeast Han 6 46994 1.28E-4
13:39527445-A-G 13 39527445 A A G Hunan 0 406 0.0 Southwest Han 1 6556 1.53E-4
13:39527445-A-G 13 39527445 A A G Qinghai 0 2 0.0 Northwest Han 1 9724 1.03E-4
13:39527445-A-G 13 39527445 A A G Yunnan 0 230 0.0 Southwest Han 1 6556 1.53E-4
13:39527445-A-G 13 39527445 A A G Heilongjiang 0 1858 0.0 Northeast Han 0 4886 0.0
13:39527445-A-G 13 39527445 A A G Jiangxi 0 710 0.0 Southeast Han 6 46994 1.28E-4
13:39527445-A-G 13 39527445 A A G Guangxi 0 76 0.0 South coast Han 1 9710 1.03E-4
13:39527445-A-G 13 39527445 A A G Liaoning 0 2182 0.0 Northeast Han 0 4886 0.0
13:39527445-A-G 13 39527445 A A G Shandong 2 4756 4.21E-4 Central Han 5 27812 1.8E-4
13:39527445-A-G 13 39527445 A A G Singapore 1 7252 1.38E-4 South coast Han 1 9710 1.03E-4
13:39527445-A-G 13 39527445 A A G Tianjin 0 1148 0.0 Central Han 5 27812 1.8E-4
13:39527445-A-G 13 39527445 A A G Zhejiang 1 9886 1.01E-4 Southeast Han 6 46994 1.28E-4
13:39527445-A-G 13 39527445 A A G Jilin 0 846 0.0 Northeast Han 0 4886 0.0
13:39527445-A-G 13 39527445 A A G Shanghai 3 17918 1.67E-4 Southeast Han 6 46994 1.28E-4
13:39527445-A-G 13 39527445 A A G Xinjiang 0 172 0.0 Northwest Han 1 9724 1.03E-4
13:39527445-A-G 13 39527445 A A G Henan 3 2064 0.001453 Central Han 5 27812 1.8E-4
13:39527445-A-G 13 39527445 A A G Chongqing 0 1104 0.0 Southwest Han 1 6556 1.53E-4
13:39527445-A-G 13 39527445 A A G Jiangsu 2 14790 1.35E-4 Southeast Han 6 46994 1.28E-4

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39527445-A-G 13 39527445 A A G Central Han 5 27812 1.8E-4
13:39527445-A-G 13 39527445 A A G Southwest Han 1 6556 1.53E-4
13:39527445-A-G 13 39527445 A A G South coast Han 1 9710 1.03E-4
13:39527445-A-G 13 39527445 A A G Northwest Han 1 9724 1.03E-4
13:39527445-A-G 13 39527445 A A G Southeast Han 6 46994 1.28E-4
13:39527445-A-G 13 39527445 A A G Northeast Han 0 4886 0.0

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.