Variant: 13:39527257-G-C
Variation Class:SNV (single nucleotide variation)
Reference allele:G
Ancestral allele:C
Alt. Allele:C
Alt. Allele Frequency:0.078469(8256/105214)
dbSNP:rs56086457
PGG.SNV:13:39527257-G-C

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39527257-G-C 13 39527257 G C C Shanghai 1414 17802 0.079429 Southeast Han 3850 46810 0.082247
13:39527257-G-C 13 39527257 G C C Hubei 246 3276 0.075092 Southwest Han 473 6516 0.072591
13:39527257-G-C 13 39527257 G C C Shanxi 166 2156 0.076994 Central Han 2130 27692 0.076918
13:39527257-G-C 13 39527257 G C C Guangdong 120 1782 0.06734 South coast Han 705 9676 0.072861
13:39527257-G-C 13 39527257 G C C Hebei 149 2166 0.06879 Central Han 2130 27692 0.076918
13:39527257-G-C 13 39527257 G C C Fujian 38 572 0.066434 South coast Han 705 9676 0.072861
13:39527257-G-C 13 39527257 G C C Shaanxi 652 9100 0.071648 Northwest Han 703 9664 0.072744
13:39527257-G-C 13 39527257 G C C Beijing 1215 15450 0.078641 Central Han 2130 27692 0.076918
13:39527257-G-C 13 39527257 G C C Gansu 28 324 0.08642 Northwest Han 703 9664 0.072744
13:39527257-G-C 13 39527257 G C C Hunan 28 406 0.068966 Southwest Han 473 6516 0.072591
13:39527257-G-C 13 39527257 G C C Tianjin 81 1134 0.071429 Central Han 2130 27692 0.076918
13:39527257-G-C 13 39527257 G C C Chongqing 92 1086 0.084715 Southwest Han 473 6516 0.072591
13:39527257-G-C 13 39527257 G C C Hainan 0 14 0.0 South coast Han 705 9676 0.072861
13:39527257-G-C 13 39527257 G C C Neimenggu 5 50 0.1 Northwest Han 703 9664 0.072744
13:39527257-G-C 13 39527257 G C C Zhejiang 839 9862 0.085074 Southeast Han 3850 46810 0.082247
13:39527257-G-C 13 39527257 G C C Guizhou 4 48 0.083333 Southwest Han 473 6516 0.072591
13:39527257-G-C 13 39527257 G C C Henan 170 2062 0.082444 Central Han 2130 27692 0.076918
13:39527257-G-C 13 39527257 G C C Guangxi 9 76 0.118421 South coast Han 705 9676 0.072861
13:39527257-G-C 13 39527257 G C C Jiangsu 1218 14750 0.082576 Southeast Han 3850 46810 0.082247
13:39527257-G-C 13 39527257 G C C Singapore 538 7228 0.074433 South coast Han 705 9676 0.072861
13:39527257-G-C 13 39527257 G C C Xizang 0 2 0.0 Southwest Han 473 6516 0.072591
13:39527257-G-C 13 39527257 G C C Jiangxi 66 710 0.092958 Southeast Han 3850 46810 0.082247
13:39527257-G-C 13 39527257 G C C Jilin 67 840 0.079762 Northeast Han 395 4856 0.081343
13:39527257-G-C 13 39527257 G C C Xianggang 0 4 0.0 South coast Han 705 9676 0.072861
13:39527257-G-C 13 39527257 G C C Liaoning 183 2180 0.083945 Northeast Han 395 4856 0.081343
13:39527257-G-C 13 39527257 G C C Sichuan 92 1470 0.062585 Southwest Han 473 6516 0.072591
13:39527257-G-C 13 39527257 G C C Shandong 349 4724 0.073878 Central Han 2130 27692 0.076918
13:39527257-G-C 13 39527257 G C C Anhui 313 3686 0.084916 Southeast Han 3850 46810 0.082247
13:39527257-G-C 13 39527257 G C C Xinjiang 17 172 0.098837 Northwest Han 703 9664 0.072744
13:39527257-G-C 13 39527257 G C C Yunnan 11 228 0.048246 Southwest Han 473 6516 0.072591
13:39527257-G-C 13 39527257 G C C Ningxia 1 16 0.0625 Northwest Han 703 9664 0.072744
13:39527257-G-C 13 39527257 G C C Qinghai 0 2 0.0 Northwest Han 703 9664 0.072744
13:39527257-G-C 13 39527257 G C C Heilongjiang 145 1836 0.078976 Northeast Han 395 4856 0.081343

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39527257-G-C 13 39527257 G C C Southeast Han 3850 46810 0.082247
13:39527257-G-C 13 39527257 G C C Southwest Han 473 6516 0.072591
13:39527257-G-C 13 39527257 G C C Central Han 2130 27692 0.076918
13:39527257-G-C 13 39527257 G C C South coast Han 705 9676 0.072861
13:39527257-G-C 13 39527257 G C C Northwest Han 703 9664 0.072744
13:39527257-G-C 13 39527257 G C C Northeast Han 395 4856 0.081343

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.