Variant: 13:39527202-A-G
Variation Class:SNV (single nucleotide variation)
Reference allele:A
Ancestral allele:A
Alt. Allele:G
Alt. Allele Frequency:0.49619(50532/101840)
dbSNP:rs9548561
PGG.SNV:13:39527202-A-G

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39527202-A-G 13 39527202 A A G Singapore 3518 6916 0.508676 South coast Han 4772 9338 0.51103
13:39527202-A-G 13 39527202 A A G Guizhou 20 42 0.47619 Southwest Han 3159 6324 0.499526
13:39527202-A-G 13 39527202 A A G Beijing 7304 14980 0.487583 Central Han 13034 26834 0.485727
13:39527202-A-G 13 39527202 A A G Xizang 1 2 0.5 Southwest Han 3159 6324 0.499526
13:39527202-A-G 13 39527202 A A G Shaanxi 4162 8750 0.475657 Northwest Han 4419 9302 0.475059
13:39527202-A-G 13 39527202 A A G Anhui 1732 3518 0.492325 Southeast Han 22895 45258 0.505877
13:39527202-A-G 13 39527202 A A G Liaoning 1002 2162 0.46346 Northeast Han 2253 4784 0.470945
13:39527202-A-G 13 39527202 A A G Fujian 281 546 0.514652 South coast Han 4772 9338 0.51103
13:39527202-A-G 13 39527202 A A G Sichuan 719 1438 0.5 Southwest Han 3159 6324 0.499526
13:39527202-A-G 13 39527202 A A G Heilongjiang 870 1800 0.483333 Northeast Han 2253 4784 0.470945
13:39527202-A-G 13 39527202 A A G Chongqing 509 1060 0.480189 Southwest Han 3159 6324 0.499526
13:39527202-A-G 13 39527202 A A G Hubei 1593 3168 0.502841 Southwest Han 3159 6324 0.499526
13:39527202-A-G 13 39527202 A A G Neimenggu 15 46 0.326087 Northwest Han 4419 9302 0.475059
13:39527202-A-G 13 39527202 A A G Henan 960 2030 0.472906 Central Han 13034 26834 0.485727
13:39527202-A-G 13 39527202 A A G Guangxi 32 76 0.421053 South coast Han 4772 9338 0.51103
13:39527202-A-G 13 39527202 A A G Guangdong 931 1782 0.522447 South coast Han 4772 9338 0.51103
13:39527202-A-G 13 39527202 A A G Tianjin 546 1092 0.5 Central Han 13034 26834 0.485727
13:39527202-A-G 13 39527202 A A G Jiangsu 7223 14466 0.499309 Southeast Han 22895 45258 0.505877
13:39527202-A-G 13 39527202 A A G Jiangxi 376 704 0.534091 Southeast Han 22895 45258 0.505877
13:39527202-A-G 13 39527202 A A G Gansu 150 324 0.462963 Northwest Han 4419 9302 0.475059
13:39527202-A-G 13 39527202 A A G Xinjiang 87 166 0.524096 Northwest Han 4419 9302 0.475059
13:39527202-A-G 13 39527202 A A G Hainan 9 14 0.642857 South coast Han 4772 9338 0.51103
13:39527202-A-G 13 39527202 A A G Hunan 210 396 0.530303 Southwest Han 3159 6324 0.499526
13:39527202-A-G 13 39527202 A A G Shandong 2205 4552 0.484402 Central Han 13034 26834 0.485727
13:39527202-A-G 13 39527202 A A G Yunnan 107 218 0.490826 Southwest Han 3159 6324 0.499526
13:39527202-A-G 13 39527202 A A G Zhejiang 4820 9460 0.509514 Southeast Han 22895 45258 0.505877
13:39527202-A-G 13 39527202 A A G Shanxi 995 2074 0.479749 Central Han 13034 26834 0.485727
13:39527202-A-G 13 39527202 A A G Ningxia 5 16 0.3125 Northwest Han 4419 9302 0.475059
13:39527202-A-G 13 39527202 A A G Shanghai 8744 17110 0.511046 Southeast Han 22895 45258 0.505877
13:39527202-A-G 13 39527202 A A G Jilin 381 822 0.463504 Northeast Han 2253 4784 0.470945
13:39527202-A-G 13 39527202 A A G Xianggang 1 4 0.25 South coast Han 4772 9338 0.51103
13:39527202-A-G 13 39527202 A A G Hebei 1024 2106 0.48623 Central Han 13034 26834 0.485727

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39527202-A-G 13 39527202 A A G South coast Han 4772 9338 0.51103
13:39527202-A-G 13 39527202 A A G Southwest Han 3159 6324 0.499526
13:39527202-A-G 13 39527202 A A G Central Han 13034 26834 0.485727
13:39527202-A-G 13 39527202 A A G Northwest Han 4419 9302 0.475059
13:39527202-A-G 13 39527202 A A G Southeast Han 22895 45258 0.505877
13:39527202-A-G 13 39527202 A A G Northeast Han 2253 4784 0.470945

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.