Variant: 13:39526918-T-A
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:T
Alt. Allele:A
Alt. Allele Frequency:0.076698(8041/104840)
dbSNP:rs61399823
PGG.SNV:13:39526918-T-A

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39526918-T-A 13 39526918 T T A Liaoning 184 2178 0.084481 Northeast Han 389 4846 0.080272
13:39526918-T-A 13 39526918 T T A Zhejiang 826 9840 0.083943 Southeast Han 3768 46668 0.080741
13:39526918-T-A 13 39526918 T T A Hebei 146 2162 0.06753 Central Han 2050 27554 0.074399
13:39526918-T-A 13 39526918 T T A Sichuan 92 1470 0.062585 Southwest Han 463 6492 0.071319
13:39526918-T-A 13 39526918 T T A Shaanxi 633 9070 0.069791 Northwest Han 680 9630 0.070613
13:39526918-T-A 13 39526918 T T A Shanxi 163 2152 0.075743 Central Han 2050 27554 0.074399
13:39526918-T-A 13 39526918 T T A Henan 167 2058 0.081147 Central Han 2050 27554 0.074399
13:39526918-T-A 13 39526918 T T A Yunnan 11 224 0.049107 Southwest Han 463 6492 0.071319
13:39526918-T-A 13 39526918 T T A Guangdong 119 1780 0.066854 South coast Han 691 9650 0.071606
13:39526918-T-A 13 39526918 T T A Shandong 336 4704 0.071429 Central Han 2050 27554 0.074399
13:39526918-T-A 13 39526918 T T A Neimenggu 4 48 0.083333 Northwest Han 680 9630 0.070613
13:39526918-T-A 13 39526918 T T A Jiangxi 66 710 0.092958 Southeast Han 3768 46668 0.080741
13:39526918-T-A 13 39526918 T T A Gansu 27 324 0.083333 Northwest Han 680 9630 0.070613
13:39526918-T-A 13 39526918 T T A Jiangsu 1192 14698 0.081099 Southeast Han 3768 46668 0.080741
13:39526918-T-A 13 39526918 T T A Beijing 1157 15344 0.075404 Central Han 2050 27554 0.074399
13:39526918-T-A 13 39526918 T T A Tianjin 81 1134 0.071429 Central Han 2050 27554 0.074399
13:39526918-T-A 13 39526918 T T A Heilongjiang 141 1832 0.076965 Northeast Han 389 4846 0.080272
13:39526918-T-A 13 39526918 T T A Shanghai 1381 17752 0.077794 Southeast Han 3768 46668 0.080741
13:39526918-T-A 13 39526918 T T A Guizhou 3 48 0.0625 Southwest Han 463 6492 0.071319
13:39526918-T-A 13 39526918 T T A Guangxi 9 76 0.118421 South coast Han 691 9650 0.071606
13:39526918-T-A 13 39526918 T T A Xinjiang 15 170 0.088235 Northwest Han 680 9630 0.070613
13:39526918-T-A 13 39526918 T T A Xizang 0 2 0.0 Southwest Han 463 6492 0.071319
13:39526918-T-A 13 39526918 T T A Hainan 0 14 0.0 South coast Han 691 9650 0.071606
13:39526918-T-A 13 39526918 T T A Qinghai 0 2 0.0 Northwest Han 680 9630 0.070613
13:39526918-T-A 13 39526918 T T A Jilin 64 836 0.076555 Northeast Han 389 4846 0.080272
13:39526918-T-A 13 39526918 T T A Chongqing 90 1084 0.083026 Southwest Han 463 6492 0.071319
13:39526918-T-A 13 39526918 T T A Hubei 240 3260 0.07362 Southwest Han 463 6492 0.071319
13:39526918-T-A 13 39526918 T T A Xianggang 0 4 0.0 South coast Han 691 9650 0.071606
13:39526918-T-A 13 39526918 T T A Hunan 27 404 0.066832 Southwest Han 463 6492 0.071319
13:39526918-T-A 13 39526918 T T A Ningxia 1 16 0.0625 Northwest Han 680 9630 0.070613
13:39526918-T-A 13 39526918 T T A Fujian 38 572 0.066434 South coast Han 691 9650 0.071606
13:39526918-T-A 13 39526918 T T A Anhui 303 3668 0.082606 Southeast Han 3768 46668 0.080741
13:39526918-T-A 13 39526918 T T A Singapore 525 7204 0.072876 South coast Han 691 9650 0.071606

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39526918-T-A 13 39526918 T T A Northeast Han 389 4846 0.080272
13:39526918-T-A 13 39526918 T T A Southeast Han 3768 46668 0.080741
13:39526918-T-A 13 39526918 T T A Central Han 2050 27554 0.074399
13:39526918-T-A 13 39526918 T T A Southwest Han 463 6492 0.071319
13:39526918-T-A 13 39526918 T T A Northwest Han 680 9630 0.070613
13:39526918-T-A 13 39526918 T T A South coast Han 691 9650 0.071606

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.