Variant: 13:39526828-A-C
Variation Class:SNV (single nucleotide variation)
Reference allele:A
Ancestral allele:A
Alt. Allele:C
Alt. Allele Frequency:0.030666(3211/104708)
dbSNP:rs79371768
PGG.SNV:13:39526828-A-C

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39526828-A-C 13 39526828 A A C Gansu 8 322 0.024845 Northwest Han 326 9620 0.033888
13:39526828-A-C 13 39526828 A A C Anhui 139 3636 0.038229 Southeast Han 1456 46514 0.031302
13:39526828-A-C 13 39526828 A A C Hunan 10 404 0.024752 Southwest Han 225 6520 0.034509
13:39526828-A-C 13 39526828 A A C Fujian 13 570 0.022807 South coast Han 317 9616 0.032966
13:39526828-A-C 13 39526828 A A C Heilongjiang 46 1854 0.024811 Northeast Han 127 4874 0.026057
13:39526828-A-C 13 39526828 A A C Jiangsu 449 14650 0.030648 Southeast Han 1456 46514 0.031302
13:39526828-A-C 13 39526828 A A C Shandong 130 4722 0.027531 Central Han 760 27564 0.027572
13:39526828-A-C 13 39526828 A A C Chongqing 46 1096 0.041971 Southwest Han 225 6520 0.034509
13:39526828-A-C 13 39526828 A A C Qinghai 0 2 0.0 Northwest Han 326 9620 0.033888
13:39526828-A-C 13 39526828 A A C Hainan 0 14 0.0 South coast Han 317 9616 0.032966
13:39526828-A-C 13 39526828 A A C Hubei 115 3274 0.035125 Southwest Han 225 6520 0.034509
13:39526828-A-C 13 39526828 A A C Jilin 25 842 0.029691 Northeast Han 127 4874 0.026057
13:39526828-A-C 13 39526828 A A C Liaoning 56 2178 0.025712 Northeast Han 127 4874 0.026057
13:39526828-A-C 13 39526828 A A C Neimenggu 5 48 0.104167 Northwest Han 326 9620 0.033888
13:39526828-A-C 13 39526828 A A C Tianjin 29 1140 0.025439 Central Han 760 27564 0.027572
13:39526828-A-C 13 39526828 A A C Shanghai 551 17704 0.031123 Southeast Han 1456 46514 0.031302
13:39526828-A-C 13 39526828 A A C Jiangxi 21 710 0.029577 Southeast Han 1456 46514 0.031302
13:39526828-A-C 13 39526828 A A C Guangxi 7 76 0.092105 South coast Han 317 9616 0.032966
13:39526828-A-C 13 39526828 A A C Shaanxi 306 9062 0.033767 Northwest Han 326 9620 0.033888
13:39526828-A-C 13 39526828 A A C Hebei 70 2156 0.032468 Central Han 760 27564 0.027572
13:39526828-A-C 13 39526828 A A C Henan 59 2056 0.028696 Central Han 760 27564 0.027572
13:39526828-A-C 13 39526828 A A C Xinjiang 6 170 0.035294 Northwest Han 326 9620 0.033888
13:39526828-A-C 13 39526828 A A C Singapore 222 7164 0.030988 South coast Han 317 9616 0.032966
13:39526828-A-C 13 39526828 A A C Zhejiang 296 9814 0.030161 Southeast Han 1456 46514 0.031302
13:39526828-A-C 13 39526828 A A C Sichuan 48 1474 0.032564 Southwest Han 225 6520 0.034509
13:39526828-A-C 13 39526828 A A C Xianggang 1 4 0.25 South coast Han 317 9616 0.032966
13:39526828-A-C 13 39526828 A A C Xizang 0 2 0.0 Southwest Han 225 6520 0.034509
13:39526828-A-C 13 39526828 A A C Guangdong 74 1788 0.041387 South coast Han 317 9616 0.032966
13:39526828-A-C 13 39526828 A A C Yunnan 6 224 0.026786 Southwest Han 225 6520 0.034509
13:39526828-A-C 13 39526828 A A C Ningxia 1 16 0.0625 Northwest Han 326 9620 0.033888
13:39526828-A-C 13 39526828 A A C Shanxi 55 2168 0.025369 Central Han 760 27564 0.027572
13:39526828-A-C 13 39526828 A A C Guizhou 0 46 0.0 Southwest Han 225 6520 0.034509
13:39526828-A-C 13 39526828 A A C Beijing 417 15322 0.027216 Central Han 760 27564 0.027572

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39526828-A-C 13 39526828 A A C Northwest Han 326 9620 0.033888
13:39526828-A-C 13 39526828 A A C Southeast Han 1456 46514 0.031302
13:39526828-A-C 13 39526828 A A C Southwest Han 225 6520 0.034509
13:39526828-A-C 13 39526828 A A C South coast Han 317 9616 0.032966
13:39526828-A-C 13 39526828 A A C Northeast Han 127 4874 0.026057
13:39526828-A-C 13 39526828 A A C Central Han 760 27564 0.027572

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.