Variant: 13:39526602-T-C
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:T
Alt. Allele:C
Alt. Allele Frequency:0.004859(509/104764)
dbSNP:rs140874803
PGG.SNV:13:39526602-T-C

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39526602-T-C 13 39526602 T T C Beijing 58 15342 0.00378 Central Han 116 27568 0.004208
13:39526602-T-C 13 39526602 T T C Hebei 11 2154 0.005107 Central Han 116 27568 0.004208
13:39526602-T-C 13 39526602 T T C Shandong 23 4704 0.004889 Central Han 116 27568 0.004208
13:39526602-T-C 13 39526602 T T C Xianggang 0 4 0.0 South coast Han 40 9664 0.004139
13:39526602-T-C 13 39526602 T T C Xinjiang 3 172 0.017442 Northwest Han 64 9636 0.006642
13:39526602-T-C 13 39526602 T T C Hainan 0 14 0.0 South coast Han 40 9664 0.004139
13:39526602-T-C 13 39526602 T T C Yunnan 0 216 0.0 Southwest Han 38 6498 0.005848
13:39526602-T-C 13 39526602 T T C Anhui 15 3662 0.004096 Southeast Han 219 46532 0.004706
13:39526602-T-C 13 39526602 T T C Hunan 2 406 0.004926 Southwest Han 38 6498 0.005848
13:39526602-T-C 13 39526602 T T C Shanxi 10 2176 0.004596 Central Han 116 27568 0.004208
13:39526602-T-C 13 39526602 T T C Jiangxi 7 710 0.009859 Southeast Han 219 46532 0.004706
13:39526602-T-C 13 39526602 T T C Henan 8 2056 0.003891 Central Han 116 27568 0.004208
13:39526602-T-C 13 39526602 T T C Jiangsu 69 14650 0.00471 Southeast Han 219 46532 0.004706
13:39526602-T-C 13 39526602 T T C Liaoning 15 2178 0.006887 Northeast Han 32 4866 0.006576
13:39526602-T-C 13 39526602 T T C Tianjin 6 1136 0.005282 Central Han 116 27568 0.004208
13:39526602-T-C 13 39526602 T T C Ningxia 0 16 0.0 Northwest Han 64 9636 0.006642
13:39526602-T-C 13 39526602 T T C Jilin 6 844 0.007109 Northeast Han 32 4866 0.006576
13:39526602-T-C 13 39526602 T T C Chongqing 7 1088 0.006434 Southwest Han 38 6498 0.005848
13:39526602-T-C 13 39526602 T T C Neimenggu 1 46 0.021739 Northwest Han 64 9636 0.006642
13:39526602-T-C 13 39526602 T T C Sichuan 9 1470 0.006122 Southwest Han 38 6498 0.005848
13:39526602-T-C 13 39526602 T T C Fujian 2 574 0.003484 South coast Han 40 9664 0.004139
13:39526602-T-C 13 39526602 T T C Qinghai 0 2 0.0 Northwest Han 64 9636 0.006642
13:39526602-T-C 13 39526602 T T C Zhejiang 48 9788 0.004904 Southeast Han 219 46532 0.004706
13:39526602-T-C 13 39526602 T T C Guizhou 0 46 0.0 Southwest Han 38 6498 0.005848
13:39526602-T-C 13 39526602 T T C Xizang 0 2 0.0 Southwest Han 38 6498 0.005848
13:39526602-T-C 13 39526602 T T C Hubei 20 3270 0.006116 Southwest Han 38 6498 0.005848
13:39526602-T-C 13 39526602 T T C Singapore 19 7206 0.002637 South coast Han 40 9664 0.004139
13:39526602-T-C 13 39526602 T T C Shaanxi 59 9078 0.006499 Northwest Han 64 9636 0.006642
13:39526602-T-C 13 39526602 T T C Guangdong 17 1790 0.009497 South coast Han 40 9664 0.004139
13:39526602-T-C 13 39526602 T T C Gansu 1 322 0.003106 Northwest Han 64 9636 0.006642
13:39526602-T-C 13 39526602 T T C Shanghai 80 17722 0.004514 Southeast Han 219 46532 0.004706
13:39526602-T-C 13 39526602 T T C Heilongjiang 11 1844 0.005965 Northeast Han 32 4866 0.006576
13:39526602-T-C 13 39526602 T T C Guangxi 2 76 0.026316 South coast Han 40 9664 0.004139

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39526602-T-C 13 39526602 T T C Central Han 116 27568 0.004208
13:39526602-T-C 13 39526602 T T C South coast Han 40 9664 0.004139
13:39526602-T-C 13 39526602 T T C Northwest Han 64 9636 0.006642
13:39526602-T-C 13 39526602 T T C Southwest Han 38 6498 0.005848
13:39526602-T-C 13 39526602 T T C Southeast Han 219 46532 0.004706
13:39526602-T-C 13 39526602 T T C Northeast Han 32 4866 0.006576

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.