Variant: 13:39525264-G-T
Variation Class:SNV (single nucleotide variation)
Reference allele:G
Ancestral allele:-
Alt. Allele:T
Alt. Allele Frequency:0.642089(65357/101788)
dbSNP:rs4612935
PGG.SNV:13:39525264-G-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39525264-G-T 13 39525264 G - T Shanghai 11253 17098 0.658147 Southeast Han 29501 45056 0.654763
13:39525264-G-T 13 39525264 G - T Hebei 1335 2112 0.632102 Central Han 16674 26548 0.62807
13:39525264-G-T 13 39525264 G - T Beijing 9251 14646 0.63164 Central Han 16674 26548 0.62807
13:39525264-G-T 13 39525264 G - T Sichuan 921 1458 0.631687 Southwest Han 4124 6392 0.645181
13:39525264-G-T 13 39525264 G - T Guangdong 1168 1774 0.658399 South coast Han 6306 9576 0.658521
13:39525264-G-T 13 39525264 G - T Jilin 505 828 0.609903 Northeast Han 2937 4786 0.613665
13:39525264-G-T 13 39525264 G - T Guangxi 47 74 0.635135 South coast Han 6306 9576 0.658521
13:39525264-G-T 13 39525264 G - T Hubei 2096 3216 0.651741 Southwest Han 4124 6392 0.645181
13:39525264-G-T 13 39525264 G - T Xinjiang 114 168 0.678571 Northwest Han 5815 9430 0.616649
13:39525264-G-T 13 39525264 G - T Tianjin 690 1110 0.621622 Central Han 16674 26548 0.62807
13:39525264-G-T 13 39525264 G - T Fujian 370 562 0.658363 South coast Han 6306 9576 0.658521
13:39525264-G-T 13 39525264 G - T Heilongjiang 1121 1794 0.624861 Northeast Han 2937 4786 0.613665
13:39525264-G-T 13 39525264 G - T Zhejiang 6235 9472 0.658256 Southeast Han 29501 45056 0.654763
13:39525264-G-T 13 39525264 G - T Henan 1261 2048 0.615723 Central Han 16674 26548 0.62807
13:39525264-G-T 13 39525264 G - T Jiangsu 9250 14302 0.646763 Southeast Han 29501 45056 0.654763
13:39525264-G-T 13 39525264 G - T Liaoning 1311 2164 0.605823 Northeast Han 2937 4786 0.613665
13:39525264-G-T 13 39525264 G - T Chongqing 696 1072 0.649254 Southwest Han 4124 6392 0.645181
13:39525264-G-T 13 39525264 G - T Xianggang 2 4 0.5 South coast Han 6306 9576 0.658521
13:39525264-G-T 13 39525264 G - T Ningxia 7 16 0.4375 Northwest Han 5815 9430 0.616649
13:39525264-G-T 13 39525264 G - T Shanxi 1302 2092 0.622371 Central Han 16674 26548 0.62807
13:39525264-G-T 13 39525264 G - T Jiangxi 478 700 0.682857 Southeast Han 29501 45056 0.654763
13:39525264-G-T 13 39525264 G - T Anhui 2285 3484 0.655855 Southeast Han 29501 45056 0.654763
13:39525264-G-T 13 39525264 G - T Neimenggu 25 46 0.543478 Northwest Han 5815 9430 0.616649
13:39525264-G-T 13 39525264 G - T Hainan 11 14 0.785714 South coast Han 6306 9576 0.658521
13:39525264-G-T 13 39525264 G - T Singapore 4708 7148 0.658646 South coast Han 6306 9576 0.658521
13:39525264-G-T 13 39525264 G - T Gansu 190 322 0.590062 Northwest Han 5815 9430 0.616649
13:39525264-G-T 13 39525264 G - T Hunan 260 396 0.656566 Southwest Han 4124 6392 0.645181
13:39525264-G-T 13 39525264 G - T Shaanxi 5479 8878 0.617144 Northwest Han 5815 9430 0.616649
13:39525264-G-T 13 39525264 G - T Shandong 2835 4540 0.624449 Central Han 16674 26548 0.62807
13:39525264-G-T 13 39525264 G - T Guizhou 25 42 0.595238 Southwest Han 4124 6392 0.645181
13:39525264-G-T 13 39525264 G - T Xizang 1 2 0.5 Southwest Han 4124 6392 0.645181
13:39525264-G-T 13 39525264 G - T Yunnan 125 206 0.606796 Southwest Han 4124 6392 0.645181

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39525264-G-T 13 39525264 G - T Southeast Han 29501 45056 0.654763
13:39525264-G-T 13 39525264 G - T Central Han 16674 26548 0.62807
13:39525264-G-T 13 39525264 G - T Southwest Han 4124 6392 0.645181
13:39525264-G-T 13 39525264 G - T South coast Han 6306 9576 0.658521
13:39525264-G-T 13 39525264 G - T Northeast Han 2937 4786 0.613665
13:39525264-G-T 13 39525264 G - T Northwest Han 5815 9430 0.616649

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.