Variant: 13:39526592-A-T
Variation Class:SNV (single nucleotide variation)
Reference allele:A
Ancestral allele:T
Alt. Allele:T
Alt. Allele Frequency:0.518148(52562/101442)
dbSNP:rs4494418
PGG.SNV:13:39526592-A-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39526592-A-T 13 39526592 A T T Heilongjiang 823 1672 0.492225 Northeast Han 2259 4678 0.482899
13:39526592-A-T 13 39526592 A T T Anhui 1908 3622 0.526781 Southeast Han 23759 44922 0.528895
13:39526592-A-T 13 39526592 A T T Guizhou 19 42 0.452381 Southwest Han 3317 6352 0.522198
13:39526592-A-T 13 39526592 A T T Shanghai 9028 16862 0.535405 Southeast Han 23759 44922 0.528895
13:39526592-A-T 13 39526592 A T T Hunan 220 402 0.547264 Southwest Han 3317 6352 0.522198
13:39526592-A-T 13 39526592 A T T Xianggang 3 4 0.75 South coast Han 5270 9636 0.546907
13:39526592-A-T 13 39526592 A T T Xinjiang 82 170 0.482353 Northwest Han 4687 9406 0.498299
13:39526592-A-T 13 39526592 A T T Gansu 147 320 0.459375 Northwest Han 4687 9406 0.498299
13:39526592-A-T 13 39526592 A T T Jilin 400 836 0.478469 Northeast Han 2259 4678 0.482899
13:39526592-A-T 13 39526592 A T T Hebei 993 1996 0.497495 Central Han 13270 26448 0.501739
13:39526592-A-T 13 39526592 A T T Shandong 2253 4524 0.498011 Central Han 13270 26448 0.501739
13:39526592-A-T 13 39526592 A T T Henan 995 2056 0.483949 Central Han 13270 26448 0.501739
13:39526592-A-T 13 39526592 A T T Zhejiang 4701 8956 0.5249 Southeast Han 23759 44922 0.528895
13:39526592-A-T 13 39526592 A T T Yunnan 93 184 0.505435 Southwest Han 3317 6352 0.522198
13:39526592-A-T 13 39526592 A T T Xizang 1 2 0.5 Southwest Han 3317 6352 0.522198
13:39526592-A-T 13 39526592 A T T Neimenggu 19 44 0.431818 Northwest Han 4687 9406 0.498299
13:39526592-A-T 13 39526592 A T T Tianjin 504 1004 0.501992 Central Han 13270 26448 0.501739
13:39526592-A-T 13 39526592 A T T Jiangxi 398 702 0.566952 Southeast Han 23759 44922 0.528895
13:39526592-A-T 13 39526592 A T T Shanxi 906 1898 0.477345 Central Han 13270 26448 0.501739
13:39526592-A-T 13 39526592 A T T Sichuan 750 1448 0.517956 Southwest Han 3317 6352 0.522198
13:39526592-A-T 13 39526592 A T T Fujian 287 514 0.558366 South coast Han 5270 9636 0.546907
13:39526592-A-T 13 39526592 A T T Jiangsu 7724 14780 0.522598 Southeast Han 23759 44922 0.528895
13:39526592-A-T 13 39526592 A T T Guangdong 970 1768 0.548643 South coast Han 5270 9636 0.546907
13:39526592-A-T 13 39526592 A T T Liaoning 1036 2170 0.477419 Northeast Han 2259 4678 0.482899
13:39526592-A-T 13 39526592 A T T Beijing 7619 14970 0.508951 Central Han 13270 26448 0.501739
13:39526592-A-T 13 39526592 A T T Guangxi 36 72 0.5 South coast Han 5270 9636 0.546907
13:39526592-A-T 13 39526592 A T T Chongqing 516 1028 0.501946 Southwest Han 3317 6352 0.522198
13:39526592-A-T 13 39526592 A T T Ningxia 6 16 0.375 Northwest Han 4687 9406 0.498299
13:39526592-A-T 13 39526592 A T T Hubei 1718 3246 0.529267 Southwest Han 3317 6352 0.522198
13:39526592-A-T 13 39526592 A T T Shaanxi 4433 8856 0.500565 Northwest Han 4687 9406 0.498299
13:39526592-A-T 13 39526592 A T T Hainan 10 14 0.714286 South coast Han 5270 9636 0.546907
13:39526592-A-T 13 39526592 A T T Singapore 3964 7264 0.545705 South coast Han 5270 9636 0.546907

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39526592-A-T 13 39526592 A T T Northeast Han 2259 4678 0.482899
13:39526592-A-T 13 39526592 A T T Southeast Han 23759 44922 0.528895
13:39526592-A-T 13 39526592 A T T Southwest Han 3317 6352 0.522198
13:39526592-A-T 13 39526592 A T T South coast Han 5270 9636 0.546907
13:39526592-A-T 13 39526592 A T T Northwest Han 4687 9406 0.498299
13:39526592-A-T 13 39526592 A T T Central Han 13270 26448 0.501739

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.