Variant: 13:39526109-C-A
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:A
Alt. Allele:A
Alt. Allele Frequency:0.641968(64989/101234)
dbSNP:rs1287944135
PGG.SNV:13:39526109-C-A

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39526109-C-A 13 39526109 C A A Beijing 9208 14600 0.630685 Central Han 16582 26430 0.627393
13:39526109-C-A 13 39526109 C A A Xinjiang 111 166 0.668675 Northwest Han 5773 9374 0.615852
13:39526109-C-A 13 39526109 C A A Neimenggu 25 46 0.543478 Northwest Han 5773 9374 0.615852
13:39526109-C-A 13 39526109 C A A Sichuan 919 1458 0.630316 Southwest Han 4106 6368 0.644786
13:39526109-C-A 13 39526109 C A A Shandong 2819 4500 0.626444 Central Han 16582 26430 0.627393
13:39526109-C-A 13 39526109 C A A Hebei 1329 2110 0.629858 Central Han 16582 26430 0.627393
13:39526109-C-A 13 39526109 C A A Shanghai 11193 17014 0.65787 Southeast Han 29377 44862 0.65483
13:39526109-C-A 13 39526109 C A A Hunan 261 396 0.659091 Southwest Han 4106 6368 0.644786
13:39526109-C-A 13 39526109 C A A Jiangsu 9223 14258 0.646865 Southeast Han 29377 44862 0.65483
13:39526109-C-A 13 39526109 C A A Shanxi 1287 2074 0.62054 Central Han 16582 26430 0.627393
13:39526109-C-A 13 39526109 C A A Jilin 508 828 0.613527 Northeast Han 2933 4784 0.613085
13:39526109-C-A 13 39526109 C A A Henan 1253 2040 0.614216 Central Han 16582 26430 0.627393
13:39526109-C-A 13 39526109 C A A Shaanxi 5442 8824 0.616727 Northwest Han 5773 9374 0.615852
13:39526109-C-A 13 39526109 C A A Chongqing 691 1066 0.648218 Southwest Han 4106 6368 0.644786
13:39526109-C-A 13 39526109 C A A Guizhou 25 42 0.595238 Southwest Han 4106 6368 0.644786
13:39526109-C-A 13 39526109 C A A Guangdong 1167 1770 0.659322 South coast Han 6218 9416 0.660365
13:39526109-C-A 13 39526109 C A A Gansu 188 322 0.583851 Northwest Han 5773 9374 0.615852
13:39526109-C-A 13 39526109 C A A Xianggang 2 4 0.5 South coast Han 6218 9416 0.660365
13:39526109-C-A 13 39526109 C A A Zhejiang 6202 9414 0.658806 Southeast Han 29377 44862 0.65483
13:39526109-C-A 13 39526109 C A A Jiangxi 477 700 0.681429 Southeast Han 29377 44862 0.65483
13:39526109-C-A 13 39526109 C A A Guangxi 47 74 0.635135 South coast Han 6218 9416 0.660365
13:39526109-C-A 13 39526109 C A A Singapore 4624 7000 0.660571 South coast Han 6218 9416 0.660365
13:39526109-C-A 13 39526109 C A A Liaoning 1306 2162 0.60407 Northeast Han 2933 4784 0.613085
13:39526109-C-A 13 39526109 C A A Fujian 367 554 0.662455 South coast Han 6218 9416 0.660365
13:39526109-C-A 13 39526109 C A A Ningxia 7 16 0.4375 Northwest Han 5773 9374 0.615852
13:39526109-C-A 13 39526109 C A A Hubei 2083 3198 0.651345 Southwest Han 4106 6368 0.644786
13:39526109-C-A 13 39526109 C A A Yunnan 126 206 0.61165 Southwest Han 4106 6368 0.644786
13:39526109-C-A 13 39526109 C A A Hainan 11 14 0.785714 South coast Han 6218 9416 0.660365
13:39526109-C-A 13 39526109 C A A Xizang 1 2 0.5 Southwest Han 4106 6368 0.644786
13:39526109-C-A 13 39526109 C A A Heilongjiang 1119 1794 0.623746 Northeast Han 2933 4784 0.613085
13:39526109-C-A 13 39526109 C A A Tianjin 686 1106 0.620253 Central Han 16582 26430 0.627393
13:39526109-C-A 13 39526109 C A A Anhui 2282 3476 0.656502 Southeast Han 29377 44862 0.65483

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39526109-C-A 13 39526109 C A A Central Han 16582 26430 0.627393
13:39526109-C-A 13 39526109 C A A Northwest Han 5773 9374 0.615852
13:39526109-C-A 13 39526109 C A A Southwest Han 4106 6368 0.644786
13:39526109-C-A 13 39526109 C A A Southeast Han 29377 44862 0.65483
13:39526109-C-A 13 39526109 C A A Northeast Han 2933 4784 0.613085
13:39526109-C-A 13 39526109 C A A South coast Han 6218 9416 0.660365

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.