Variant: 13:39526175-T-C
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:T
Alt. Allele:C
Alt. Allele Frequency:0.097802(10108/103352)
dbSNP:rs73169414
PGG.SNV:13:39526175-T-C

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39526175-T-C 13 39526175 T T C Chongqing 118 1074 0.10987 Southwest Han 624 6490 0.096148
13:39526175-T-C 13 39526175 T T C Singapore 694 7192 0.096496 South coast Han 899 9622 0.093432
13:39526175-T-C 13 39526175 T T C Jiangsu 1528 14616 0.104543 Southeast Han 4523 45856 0.098635
13:39526175-T-C 13 39526175 T T C Yunnan 16 214 0.074766 Southwest Han 624 6490 0.096148
13:39526175-T-C 13 39526175 T T C Liaoning 236 2176 0.108456 Northeast Han 528 4844 0.109001
13:39526175-T-C 13 39526175 T T C Jiangxi 68 708 0.096045 Southeast Han 4523 45856 0.098635
13:39526175-T-C 13 39526175 T T C Shanxi 223 2126 0.104892 Central Han 2618 26918 0.097258
13:39526175-T-C 13 39526175 T T C Fujian 53 564 0.093972 South coast Han 899 9622 0.093432
13:39526175-T-C 13 39526175 T T C Guangxi 6 74 0.081081 South coast Han 899 9622 0.093432
13:39526175-T-C 13 39526175 T T C Guizhou 5 44 0.113636 Southwest Han 624 6490 0.096148
13:39526175-T-C 13 39526175 T T C Tianjin 88 1112 0.079137 Central Han 2618 26918 0.097258
13:39526175-T-C 13 39526175 T T C Shandong 456 4592 0.099303 Central Han 2618 26918 0.097258
13:39526175-T-C 13 39526175 T T C Xizang 0 2 0.0 Southwest Han 624 6490 0.096148
13:39526175-T-C 13 39526175 T T C Anhui 325 3530 0.092068 Southeast Han 4523 45856 0.098635
13:39526175-T-C 13 39526175 T T C Xianggang 0 4 0.0 South coast Han 899 9622 0.093432
13:39526175-T-C 13 39526175 T T C Hebei 204 2120 0.096226 Central Han 2618 26918 0.097258
13:39526175-T-C 13 39526175 T T C Shanghai 1625 17364 0.093584 Southeast Han 4523 45856 0.098635
13:39526175-T-C 13 39526175 T T C Hubei 323 3284 0.098356 Southwest Han 624 6490 0.096148
13:39526175-T-C 13 39526175 T T C Gansu 29 322 0.090062 Northwest Han 916 9622 0.095199
13:39526175-T-C 13 39526175 T T C Jilin 93 842 0.110451 Northeast Han 528 4844 0.109001
13:39526175-T-C 13 39526175 T T C Henan 225 2064 0.109012 Central Han 2618 26918 0.097258
13:39526175-T-C 13 39526175 T T C Guangdong 145 1774 0.081736 South coast Han 899 9622 0.093432
13:39526175-T-C 13 39526175 T T C Ningxia 1 16 0.0625 Northwest Han 916 9622 0.095199
13:39526175-T-C 13 39526175 T T C Zhejiang 977 9638 0.10137 Southeast Han 4523 45856 0.098635
13:39526175-T-C 13 39526175 T T C Beijing 1422 14904 0.095411 Central Han 2618 26918 0.097258
13:39526175-T-C 13 39526175 T T C Hunan 31 400 0.0775 Southwest Han 624 6490 0.096148
13:39526175-T-C 13 39526175 T T C Shaanxi 864 9066 0.095301 Northwest Han 916 9622 0.095199
13:39526175-T-C 13 39526175 T T C Neimenggu 4 46 0.086957 Northwest Han 916 9622 0.095199
13:39526175-T-C 13 39526175 T T C Hainan 1 14 0.071429 South coast Han 899 9622 0.093432
13:39526175-T-C 13 39526175 T T C Xinjiang 18 172 0.104651 Northwest Han 916 9622 0.095199
13:39526175-T-C 13 39526175 T T C Sichuan 131 1472 0.088995 Southwest Han 624 6490 0.096148
13:39526175-T-C 13 39526175 T T C Heilongjiang 199 1826 0.108981 Northeast Han 528 4844 0.109001

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39526175-T-C 13 39526175 T T C Southwest Han 624 6490 0.096148
13:39526175-T-C 13 39526175 T T C South coast Han 899 9622 0.093432
13:39526175-T-C 13 39526175 T T C Southeast Han 4523 45856 0.098635
13:39526175-T-C 13 39526175 T T C Northeast Han 528 4844 0.109001
13:39526175-T-C 13 39526175 T T C Central Han 2618 26918 0.097258
13:39526175-T-C 13 39526175 T T C Northwest Han 916 9622 0.095199

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.