Variant: 13:39525907-G-A
Variation Class:SNV (single nucleotide variation)
Reference allele:G
Ancestral allele:G
Alt. Allele:A
Alt. Allele Frequency:0.096623(10603/109736)
dbSNP:rs73169412
PGG.SNV:13:39525907-G-A

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39525907-G-A 13 39525907 G G A Zhejiang 980 9636 0.101702 Southeast Han 4523 45810 0.098734
13:39525907-G-A 13 39525907 G G A Hunan 31 400 0.0775 Southwest Han 623 6486 0.096053
13:39525907-G-A 13 39525907 G G A Sichuan 131 1472 0.088995 Southwest Han 623 6486 0.096053
13:39525907-G-A 13 39525907 G G A Tianjin 88 1112 0.079137 Central Han 2618 26910 0.097287
13:39525907-G-A 13 39525907 G G A Jiangsu 1521 14582 0.104307 Southeast Han 4523 45810 0.098734
13:39525907-G-A 13 39525907 G G A Jiangxi 68 708 0.096045 Southeast Han 4523 45810 0.098734
13:39525907-G-A 13 39525907 G G A Shandong 457 4594 0.099478 Central Han 2618 26910 0.097287
13:39525907-G-A 13 39525907 G G A Xinjiang 18 172 0.104651 Northwest Han 908 9604 0.094544
13:39525907-G-A 13 39525907 G G A Singapore 691 7170 0.096374 South coast Han 1402 16086 0.087157
13:39525907-G-A 13 39525907 G G A Xianggang 0 4 0.0 South coast Han 1402 16086 0.087157
13:39525907-G-A 13 39525907 G G A Beijing 1418 14890 0.095232 Central Han 2618 26910 0.097287
13:39525907-G-A 13 39525907 G G A Hebei 206 2124 0.096987 Central Han 2618 26910 0.097287
13:39525907-G-A 13 39525907 G G A Guangxi 6 74 0.081081 South coast Han 1402 16086 0.087157
13:39525907-G-A 13 39525907 G G A Shaanxi 856 9048 0.094607 Northwest Han 908 9604 0.094544
13:39525907-G-A 13 39525907 G G A Heilongjiang 199 1826 0.108981 Northeast Han 529 4840 0.109298
13:39525907-G-A 13 39525907 G G A Gansu 29 322 0.090062 Northwest Han 908 9604 0.094544
13:39525907-G-A 13 39525907 G G A Neimenggu 4 46 0.086957 Northwest Han 908 9604 0.094544
13:39525907-G-A 13 39525907 G G A Fujian 53 564 0.093972 South coast Han 1402 16086 0.087157
13:39525907-G-A 13 39525907 G G A Xizang 0 2 0.0 Southwest Han 623 6486 0.096053
13:39525907-G-A 13 39525907 G G A Yunnan 16 216 0.074074 Southwest Han 623 6486 0.096053
13:39525907-G-A 13 39525907 G G A Shanxi 223 2128 0.104793 Central Han 2618 26910 0.097287
13:39525907-G-A 13 39525907 G G A Guizhou 5 44 0.113636 Southwest Han 623 6486 0.096053
13:39525907-G-A 13 39525907 G G A Jilin 91 838 0.108592 Northeast Han 529 4840 0.109298
13:39525907-G-A 13 39525907 G G A Hubei 322 3278 0.098231 Southwest Han 623 6486 0.096053
13:39525907-G-A 13 39525907 G G A Hainan 1 14 0.071429 South coast Han 1402 16086 0.087157
13:39525907-G-A 13 39525907 G G A Anhui 323 3526 0.091605 Southeast Han 4523 45810 0.098734
13:39525907-G-A 13 39525907 G G A Chongqing 118 1074 0.10987 Southwest Han 623 6486 0.096053
13:39525907-G-A 13 39525907 G G A Henan 226 2062 0.109602 Central Han 2618 26910 0.097287
13:39525907-G-A 13 39525907 G G A Guangdong 144 1774 0.081172 South coast Han 1402 16086 0.087157
13:39525907-G-A 13 39525907 G G A Ningxia 1 16 0.0625 Northwest Han 908 9604 0.094544
13:39525907-G-A 13 39525907 G G A Shanghai 1631 17358 0.093962 Southeast Han 4523 45810 0.098734
13:39525907-G-A 13 39525907 G G A Liaoning 239 2176 0.109835 Northeast Han 529 4840 0.109298

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39525907-G-A 13 39525907 G G A Southeast Han 4523 45810 0.098734
13:39525907-G-A 13 39525907 G G A Southwest Han 623 6486 0.096053
13:39525907-G-A 13 39525907 G G A Central Han 2618 26910 0.097287
13:39525907-G-A 13 39525907 G G A Northwest Han 908 9604 0.094544
13:39525907-G-A 13 39525907 G G A South coast Han 1402 16086 0.087157
13:39525907-G-A 13 39525907 G G A Northeast Han 529 4840 0.109298

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.