Variant: 13:39525265-T-C
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:-
Alt. Allele:C
Alt. Allele Frequency:0.500826(51513/102856)
dbSNP:rs4381467
PGG.SNV:13:39525265-T-C

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39525265-T-C 13 39525265 T - C Heilongjiang 882 1828 0.482495 Northeast Han 2268 4822 0.470344
13:39525265-T-C 13 39525265 T - C Guizhou 21 46 0.456522 Southwest Han 3254 6434 0.505751
13:39525265-T-C 13 39525265 T - C Liaoning 1001 2162 0.462997 Northeast Han 2268 4822 0.470344
13:39525265-T-C 13 39525265 T - C Shanxi 1012 2124 0.47646 Central Han 13143 26954 0.487609
13:39525265-T-C 13 39525265 T - C Guangxi 31 72 0.430556 South coast Han 4991 9554 0.522399
13:39525265-T-C 13 39525265 T - C Ningxia 5 16 0.3125 Northwest Han 4507 9472 0.475823
13:39525265-T-C 13 39525265 T - C Henan 960 2044 0.469667 Central Han 13143 26954 0.487609
13:39525265-T-C 13 39525265 T - C Fujian 299 566 0.528269 South coast Han 4991 9554 0.522399
13:39525265-T-C 13 39525265 T - C Chongqing 532 1094 0.486289 Southwest Han 3254 6434 0.505751
13:39525265-T-C 13 39525265 T - C Yunnan 106 218 0.486239 Southwest Han 3254 6434 0.505751
13:39525265-T-C 13 39525265 T - C Anhui 1791 3544 0.505361 Southeast Han 23350 45620 0.511837
13:39525265-T-C 13 39525265 T - C Hainan 10 14 0.714286 South coast Han 4991 9554 0.522399
13:39525265-T-C 13 39525265 T - C Shaanxi 4251 8920 0.47657 Northwest Han 4507 9472 0.475823
13:39525265-T-C 13 39525265 T - C Hunan 217 402 0.539801 Southwest Han 3254 6434 0.505751
13:39525265-T-C 13 39525265 T - C Tianjin 561 1114 0.503591 Central Han 13143 26954 0.487609
13:39525265-T-C 13 39525265 T - C Hubei 1642 3212 0.511208 Southwest Han 3254 6434 0.505751
13:39525265-T-C 13 39525265 T - C Gansu 149 324 0.459877 Northwest Han 4507 9472 0.475823
13:39525265-T-C 13 39525265 T - C Beijing 7341 14924 0.491892 Central Han 13143 26954 0.487609
13:39525265-T-C 13 39525265 T - C Xinjiang 87 166 0.524096 Northwest Han 4507 9472 0.475823
13:39525265-T-C 13 39525265 T - C Jilin 385 832 0.46274 Northeast Han 2268 4822 0.470344
13:39525265-T-C 13 39525265 T - C Hebei 1038 2122 0.489161 Central Han 13143 26954 0.487609
13:39525265-T-C 13 39525265 T - C Shandong 2231 4626 0.482274 Central Han 13143 26954 0.487609
13:39525265-T-C 13 39525265 T - C Neimenggu 15 46 0.326087 Northwest Han 4507 9472 0.475823
13:39525265-T-C 13 39525265 T - C Zhejiang 4965 9644 0.514828 Southeast Han 23350 45620 0.511837
13:39525265-T-C 13 39525265 T - C Singapore 3714 7114 0.522069 South coast Han 4991 9554 0.522399
13:39525265-T-C 13 39525265 T - C Jiangxi 390 702 0.555556 Southeast Han 23350 45620 0.511837
13:39525265-T-C 13 39525265 T - C Jiangsu 7214 14408 0.500694 Southeast Han 23350 45620 0.511837
13:39525265-T-C 13 39525265 T - C Shanghai 8990 17322 0.518993 Southeast Han 23350 45620 0.511837
13:39525265-T-C 13 39525265 T - C Guangdong 936 1784 0.524664 South coast Han 4991 9554 0.522399
13:39525265-T-C 13 39525265 T - C Xianggang 1 4 0.25 South coast Han 4991 9554 0.522399
13:39525265-T-C 13 39525265 T - C Sichuan 735 1460 0.503425 Southwest Han 3254 6434 0.505751
13:39525265-T-C 13 39525265 T - C Xizang 1 2 0.5 Southwest Han 3254 6434 0.505751

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
13:39525265-T-C 13 39525265 T - C Northeast Han 2268 4822 0.470344
13:39525265-T-C 13 39525265 T - C Southwest Han 3254 6434 0.505751
13:39525265-T-C 13 39525265 T - C Central Han 13143 26954 0.487609
13:39525265-T-C 13 39525265 T - C South coast Han 4991 9554 0.522399
13:39525265-T-C 13 39525265 T - C Northwest Han 4507 9472 0.475823
13:39525265-T-C 13 39525265 T - C Southeast Han 23350 45620 0.511837

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.