Variant: 18:10362142-T-C
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:C
Alt. Allele:C
Alt. Allele Frequency:0.712321(68313/95902)
dbSNP:rs7228842
PGG.SNV:18:10362142-T-C

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
18:10362142-T-C 18 10362142 T C C Shaanxi 5489 7802 0.703538 Northwest Han 5880 8330 0.705882
18:10362142-T-C 18 10362142 T C C Sichuan 960 1342 0.71535 Southwest Han 4073 5782 0.704428
18:10362142-T-C 18 10362142 T C C Zhejiang 5970 8264 0.72241 Southeast Han 28177 39578 0.711936
18:10362142-T-C 18 10362142 T C C Hunan 252 366 0.688525 Southwest Han 4073 5782 0.704428
18:10362142-T-C 18 10362142 T C C Heilongjiang 1194 1658 0.720145 Northeast Han 3225 4546 0.709415
18:10362142-T-C 18 10362142 T C C Shandong 2737 3772 0.72561 Central Han 16668 23148 0.720062
18:10362142-T-C 18 10362142 T C C Shanghai 10906 15668 0.696068 Southeast Han 28177 39578 0.711936
18:10362142-T-C 18 10362142 T C C Henan 1364 1912 0.713389 Central Han 16668 23148 0.720062
18:10362142-T-C 18 10362142 T C C Tianjin 692 980 0.706122 Central Han 16668 23148 0.720062
18:10362142-T-C 18 10362142 T C C Beijing 9063 12574 0.720773 Central Han 16668 23148 0.720062
18:10362142-T-C 18 10362142 T C C Jiangsu 9038 12502 0.722924 Southeast Han 28177 39578 0.711936
18:10362142-T-C 18 10362142 T C C Guangdong 1237 1752 0.70605 South coast Han 10290 14518 0.708775
18:10362142-T-C 18 10362142 T C C Liaoning 1509 2122 0.711122 Northeast Han 3225 4546 0.709415
18:10362142-T-C 18 10362142 T C C Hebei 1417 1978 0.71638 Central Han 16668 23148 0.720062
18:10362142-T-C 18 10362142 T C C Shanxi 1395 1932 0.72205 Central Han 16668 23148 0.720062
18:10362142-T-C 18 10362142 T C C Hubei 2018 2828 0.713579 Southwest Han 4073 5782 0.704428
18:10362142-T-C 18 10362142 T C C Gansu 235 318 0.738994 Northwest Han 5880 8330 0.705882
18:10362142-T-C 18 10362142 T C C Jiangxi 471 692 0.680636 Southeast Han 28177 39578 0.711936
18:10362142-T-C 18 10362142 T C C Guangxi 49 68 0.720588 South coast Han 10290 14518 0.708775
18:10362142-T-C 18 10362142 T C C Fujian 344 488 0.704918 South coast Han 10290 14518 0.708775
18:10362142-T-C 18 10362142 T C C Jilin 522 766 0.681462 Northeast Han 3225 4546 0.709415
18:10362142-T-C 18 10362142 T C C Chongqing 695 1024 0.678711 Southwest Han 4073 5782 0.704428
18:10362142-T-C 18 10362142 T C C Anhui 1792 2452 0.730832 Southeast Han 28177 39578 0.711936
18:10362142-T-C 18 10362142 T C C Hainan 6 14 0.428571 South coast Han 10290 14518 0.708775
18:10362142-T-C 18 10362142 T C C Neimenggu 29 40 0.725 Northwest Han 5880 8330 0.705882
18:10362142-T-C 18 10362142 T C C Xianggang 2 4 0.5 South coast Han 10290 14518 0.708775
18:10362142-T-C 18 10362142 T C C Yunnan 120 178 0.674157 Southwest Han 4073 5782 0.704428
18:10362142-T-C 18 10362142 T C C Xinjiang 119 160 0.74375 Northwest Han 5880 8330 0.705882
18:10362142-T-C 18 10362142 T C C Guizhou 26 42 0.619048 Southwest Han 4073 5782 0.704428
18:10362142-T-C 18 10362142 T C C Singapore 4760 6714 0.708966 South coast Han 10290 14518 0.708775
18:10362142-T-C 18 10362142 T C C Ningxia 6 8 0.75 Northwest Han 5880 8330 0.705882
18:10362142-T-C 18 10362142 T C C Xizang 2 2 1.0 Southwest Han 4073 5782 0.704428
18:10362142-T-C 18 10362142 T C C Qinghai 2 2 1.0 Northwest Han 5880 8330 0.705882

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
18:10362142-T-C 18 10362142 T C C Northwest Han 5880 8330 0.705882
18:10362142-T-C 18 10362142 T C C Southwest Han 4073 5782 0.704428
18:10362142-T-C 18 10362142 T C C Southeast Han 28177 39578 0.711936
18:10362142-T-C 18 10362142 T C C Northeast Han 3225 4546 0.709415
18:10362142-T-C 18 10362142 T C C Central Han 16668 23148 0.720062
18:10362142-T-C 18 10362142 T C C South coast Han 10290 14518 0.708775

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.