Variant: 1:6599768-T-G
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:T
Alt. Allele:G
Alt. Allele Frequency:0.165299(12530/75802)
dbSNP:rs12028881
PGG.SNV:1:6599768-T-G
gnomAD:1:6599768-T-G

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6599768-T-G 1 6599768 T T G fu_jian 65 392 0.165816 South coast Han 2612 14476 0.180437
1:6599768-T-G 1 6599768 T T G yun_nan 29 206 0.140777 Southwest Han 643 4118 0.156144
1:6599768-T-G 1 6599768 T T G tian_jin 130 740 0.175676 Central China Han 2978 18308 0.162661
1:6599768-T-G 1 6599768 T T G he_bei 223 1320 0.168939 Central China Han 2978 18308 0.162661
1:6599768-T-G 1 6599768 T T G hu_bei 455 2860 0.159091 Southwest Han 643 4118 0.156144
1:6599768-T-G 1 6599768 T T G singapore 1230 7078 0.173778 South coast Han 2612 14476 0.180437
1:6599768-T-G 1 6599768 T T G jiang_su 2058 12700 0.162047 Southeast Han 5655 34900 0.162034
1:6599768-T-G 1 6599768 T T G xi_zang 0 2 0.0 Southwest Han 643 4118 0.156144
1:6599768-T-G 1 6599768 T T G liao_ning 65 402 0.161692 Northeast Han 291 1854 0.156958
1:6599768-T-G 1 6599768 T T G qing_hai 0 2 0.0 Northwest Han 351 2146 0.16356
1:6599768-T-G 1 6599768 T T G hai_nan 0 2 0.0 South coast Han 2612 14476 0.180437
1:6599768-T-G 1 6599768 T T G si_chuan 39 264 0.147727 Southwest Han 643 4118 0.156144
1:6599768-T-G 1 6599768 T T G gui_zhou 4 44 0.090909 Southwest Han 643 4118 0.156144
1:6599768-T-G 1 6599768 T T G shan_xi 229 1436 0.159471 Central China Han 2978 18308 0.162661
1:6599768-T-G 1 6599768 T T G guang_xi 10 40 0.25 South coast Han 2612 14476 0.180437
1:6599768-T-G 1 6599768 T T G ji_lin 53 390 0.135897 Northeast Han 291 1854 0.156958
1:6599768-T-G 1 6599768 T T G shang_hai 1955 11946 0.163653 Southeast Han 5655 34900 0.162034
1:6599768-T-G 1 6599768 T T G ning_xia 4 14 0.285714 Northwest Han 351 2146 0.16356
1:6599768-T-G 1 6599768 T T G hei_long_jiang 173 1062 0.1629 Northeast Han 291 1854 0.156958
1:6599768-T-G 1 6599768 T T G nei_meng_gu 8 50 0.16 Northwest Han 351 2146 0.16356
1:6599768-T-G 1 6599768 T T G chong_qing 77 488 0.157787 Southwest Han 643 4118 0.156144
1:6599768-T-G 1 6599768 T T G gan_su 10 62 0.16129 Northwest Han 351 2146 0.16356
1:6599768-T-G 1 6599768 T T G jiang_xi 23 96 0.239583 Southeast Han 5655 34900 0.162034
1:6599768-T-G 1 6599768 T T G he_nan 123 846 0.14539 Central China Han 2978 18308 0.162661
1:6599768-T-G 1 6599768 T T G guang_dong 39 230 0.169565 South coast Han 2612 14476 0.180437
1:6599768-T-G 1 6599768 T T G hu_nan 39 254 0.153543 Southwest Han 643 4118 0.156144
1:6599768-T-G 1 6599768 T T G shan_dong 585 3574 0.163682 Central China Han 2978 18308 0.162661
1:6599768-T-G 1 6599768 T T G bei_jing 1688 10392 0.162433 Central China Han 2978 18308 0.162661
1:6599768-T-G 1 6599768 T T G xin_jiang 4 30 0.133333 Northwest Han 351 2146 0.16356
1:6599768-T-G 1 6599768 T T G zhe_jiang 1229 7454 0.164878 Southeast Han 5655 34900 0.162034
1:6599768-T-G 1 6599768 T T G shaan_xi 325 1988 0.163481 Northwest Han 351 2146 0.16356
1:6599768-T-G 1 6599768 T T G xiang_gang 1 4 0.25 South coast Han 2612 14476 0.180437
1:6599768-T-G 1 6599768 T T G tai_wan 1267 6730 0.188262 South coast Han 2612 14476 0.180437
1:6599768-T-G 1 6599768 T T G an_hui 390 2704 0.144231 Southeast Han 5655 34900 0.162034

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6599768-T-G 1 6599768 T T G South coast Han 2612 14476 0.180437
1:6599768-T-G 1 6599768 T T G Southwest Han 643 4118 0.156144
1:6599768-T-G 1 6599768 T T G Central China Han 2978 18308 0.162661
1:6599768-T-G 1 6599768 T T G Southeast Han 5655 34900 0.162034
1:6599768-T-G 1 6599768 T T G Northeast Han 291 1854 0.156958
1:6599768-T-G 1 6599768 T T G Northwest Han 351 2146 0.16356

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.