Variant: 1:6599523-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:T
Alt. Allele:T
Alt. Allele Frequency:0.165168(12526/75838)
dbSNP:rs4908911
PGG.SNV:1:6599523-C-T
gnomAD:1:6599523-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6599523-C-T 1 6599523 C T T tian_jin 130 740 0.175676 Central China Han 2979 18326 0.162556
1:6599523-C-T 1 6599523 C T T fu_jian 65 392 0.165816 South coast Han 2609 14478 0.180204
1:6599523-C-T 1 6599523 C T T yun_nan 29 206 0.140777 Southwest Han 643 4118 0.156144
1:6599523-C-T 1 6599523 C T T he_bei 222 1320 0.168182 Central China Han 2979 18326 0.162556
1:6599523-C-T 1 6599523 C T T hu_bei 455 2860 0.159091 Southwest Han 643 4118 0.156144
1:6599523-C-T 1 6599523 C T T singapore 1229 7080 0.173588 South coast Han 2609 14478 0.180204
1:6599523-C-T 1 6599523 C T T jiang_su 2057 12706 0.161892 Southeast Han 5653 34916 0.161903
1:6599523-C-T 1 6599523 C T T xi_zang 0 2 0.0 Southwest Han 643 4118 0.156144
1:6599523-C-T 1 6599523 C T T liao_ning 66 402 0.164179 Northeast Han 292 1856 0.157328
1:6599523-C-T 1 6599523 C T T qing_hai 0 2 0.0 Northwest Han 350 2144 0.163246
1:6599523-C-T 1 6599523 C T T hai_nan 0 2 0.0 South coast Han 2609 14478 0.180204
1:6599523-C-T 1 6599523 C T T si_chuan 39 264 0.147727 Southwest Han 643 4118 0.156144
1:6599523-C-T 1 6599523 C T T gui_zhou 4 44 0.090909 Southwest Han 643 4118 0.156144
1:6599523-C-T 1 6599523 C T T shan_xi 230 1440 0.159722 Central China Han 2979 18326 0.162556
1:6599523-C-T 1 6599523 C T T guang_xi 10 40 0.25 South coast Han 2609 14478 0.180204
1:6599523-C-T 1 6599523 C T T ji_lin 53 390 0.135897 Northeast Han 292 1856 0.157328
1:6599523-C-T 1 6599523 C T T shang_hai 1955 11952 0.163571 Southeast Han 5653 34916 0.161903
1:6599523-C-T 1 6599523 C T T ning_xia 4 14 0.285714 Northwest Han 350 2144 0.163246
1:6599523-C-T 1 6599523 C T T hei_long_jiang 173 1064 0.162594 Northeast Han 292 1856 0.157328
1:6599523-C-T 1 6599523 C T T nei_meng_gu 8 50 0.16 Northwest Han 350 2144 0.163246
1:6599523-C-T 1 6599523 C T T chong_qing 77 488 0.157787 Southwest Han 643 4118 0.156144
1:6599523-C-T 1 6599523 C T T gan_su 10 62 0.16129 Northwest Han 350 2144 0.163246
1:6599523-C-T 1 6599523 C T T jiang_xi 23 96 0.239583 Southeast Han 5653 34916 0.161903
1:6599523-C-T 1 6599523 C T T guang_dong 39 230 0.169565 South coast Han 2609 14478 0.180204
1:6599523-C-T 1 6599523 C T T he_nan 123 848 0.145047 Central China Han 2979 18326 0.162556
1:6599523-C-T 1 6599523 C T T hu_nan 39 254 0.153543 Southwest Han 643 4118 0.156144
1:6599523-C-T 1 6599523 C T T shan_dong 586 3580 0.163687 Central China Han 2979 18326 0.162556
1:6599523-C-T 1 6599523 C T T bei_jing 1688 10398 0.162339 Central China Han 2979 18326 0.162556
1:6599523-C-T 1 6599523 C T T xin_jiang 4 30 0.133333 Northwest Han 350 2144 0.163246
1:6599523-C-T 1 6599523 C T T zhe_jiang 1228 7458 0.164655 Southeast Han 5653 34916 0.161903
1:6599523-C-T 1 6599523 C T T shaan_xi 324 1986 0.163142 Northwest Han 350 2144 0.163246
1:6599523-C-T 1 6599523 C T T xiang_gang 1 4 0.25 South coast Han 2609 14478 0.180204
1:6599523-C-T 1 6599523 C T T tai_wan 1265 6730 0.187964 South coast Han 2609 14478 0.180204
1:6599523-C-T 1 6599523 C T T an_hui 390 2704 0.144231 Southeast Han 5653 34916 0.161903

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6599523-C-T 1 6599523 C T T Central China Han 2979 18326 0.162556
1:6599523-C-T 1 6599523 C T T South coast Han 2609 14478 0.180204
1:6599523-C-T 1 6599523 C T T Southwest Han 643 4118 0.156144
1:6599523-C-T 1 6599523 C T T Southeast Han 5653 34916 0.161903
1:6599523-C-T 1 6599523 C T T Northeast Han 292 1856 0.157328
1:6599523-C-T 1 6599523 C T T Northwest Han 350 2144 0.163246

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.