Variant: 1:6597861-T-C
Variation Class:SNV (single nucleotide variation)
Reference allele:T
Ancestral allele:T
Alt. Allele:C
Alt. Allele Frequency:0.165263(12522/75770)
dbSNP:rs11122085
PGG.SNV:1:6597861-T-C
gnomAD:1:6597861-T-C

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6597861-T-C 1 6597861 T T C tian_jin 130 738 0.176152 Central China Han 2984 18322 0.162864
1:6597861-T-C 1 6597861 T T C yun_nan 29 206 0.140777 Southwest Han 640 4110 0.155718
1:6597861-T-C 1 6597861 T T C fu_jian 65 392 0.165816 South coast Han 2605 14444 0.180352
1:6597861-T-C 1 6597861 T T C he_bei 223 1322 0.168684 Central China Han 2984 18322 0.162864
1:6597861-T-C 1 6597861 T T C hu_bei 452 2854 0.158374 Southwest Han 640 4110 0.155718
1:6597861-T-C 1 6597861 T T C singapore 1222 7054 0.173235 South coast Han 2605 14444 0.180352
1:6597861-T-C 1 6597861 T T C jiang_su 2053 12696 0.161704 Southeast Han 5651 34896 0.161938
1:6597861-T-C 1 6597861 T T C xi_zang 0 2 0.0 Southwest Han 640 4110 0.155718
1:6597861-T-C 1 6597861 T T C liao_ning 66 402 0.164179 Northeast Han 291 1852 0.157127
1:6597861-T-C 1 6597861 T T C qing_hai 0 2 0.0 Northwest Han 351 2146 0.16356
1:6597861-T-C 1 6597861 T T C hai_nan 0 2 0.0 South coast Han 2605 14444 0.180352
1:6597861-T-C 1 6597861 T T C si_chuan 39 264 0.147727 Southwest Han 640 4110 0.155718
1:6597861-T-C 1 6597861 T T C gui_zhou 4 44 0.090909 Southwest Han 640 4110 0.155718
1:6597861-T-C 1 6597861 T T C shan_xi 230 1440 0.159722 Central China Han 2984 18322 0.162864
1:6597861-T-C 1 6597861 T T C guang_xi 10 38 0.263158 South coast Han 2605 14444 0.180352
1:6597861-T-C 1 6597861 T T C ji_lin 53 388 0.136598 Northeast Han 291 1852 0.157127
1:6597861-T-C 1 6597861 T T C shang_hai 1955 11944 0.163681 Southeast Han 5651 34896 0.161938
1:6597861-T-C 1 6597861 T T C ning_xia 4 14 0.285714 Northwest Han 351 2146 0.16356
1:6597861-T-C 1 6597861 T T C hei_long_jiang 172 1062 0.161959 Northeast Han 291 1852 0.157127
1:6597861-T-C 1 6597861 T T C nei_meng_gu 8 50 0.16 Northwest Han 351 2146 0.16356
1:6597861-T-C 1 6597861 T T C chong_qing 77 486 0.158436 Southwest Han 640 4110 0.155718
1:6597861-T-C 1 6597861 T T C gan_su 10 62 0.16129 Northwest Han 351 2146 0.16356
1:6597861-T-C 1 6597861 T T C jiang_xi 23 96 0.239583 Southeast Han 5651 34896 0.161938
1:6597861-T-C 1 6597861 T T C he_nan 123 848 0.145047 Central China Han 2984 18322 0.162864
1:6597861-T-C 1 6597861 T T C guang_dong 39 230 0.169565 South coast Han 2605 14444 0.180352
1:6597861-T-C 1 6597861 T T C hu_nan 39 254 0.153543 Southwest Han 640 4110 0.155718
1:6597861-T-C 1 6597861 T T C shan_dong 587 3578 0.164058 Central China Han 2984 18322 0.162864
1:6597861-T-C 1 6597861 T T C bei_jing 1691 10396 0.162659 Central China Han 2984 18322 0.162864
1:6597861-T-C 1 6597861 T T C xin_jiang 4 30 0.133333 Northwest Han 351 2146 0.16356
1:6597861-T-C 1 6597861 T T C zhe_jiang 1227 7454 0.16461 Southeast Han 5651 34896 0.161938
1:6597861-T-C 1 6597861 T T C shaan_xi 325 1988 0.163481 Northwest Han 351 2146 0.16356
1:6597861-T-C 1 6597861 T T C xiang_gang 1 4 0.25 South coast Han 2605 14444 0.180352
1:6597861-T-C 1 6597861 T T C tai_wan 1268 6724 0.188578 South coast Han 2605 14444 0.180352
1:6597861-T-C 1 6597861 T T C an_hui 393 2706 0.145233 Southeast Han 5651 34896 0.161938

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6597861-T-C 1 6597861 T T C Central China Han 2984 18322 0.162864
1:6597861-T-C 1 6597861 T T C Southwest Han 640 4110 0.155718
1:6597861-T-C 1 6597861 T T C South coast Han 2605 14444 0.180352
1:6597861-T-C 1 6597861 T T C Southeast Han 5651 34896 0.161938
1:6597861-T-C 1 6597861 T T C Northeast Han 291 1852 0.157127
1:6597861-T-C 1 6597861 T T C Northwest Han 351 2146 0.16356

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.