Variant: 1:6590133-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:C
Alt. Allele:T
Alt. Allele Frequency:0.163808(12414/75784)
dbSNP:rs11122082
PGG.SNV:1:6590133-C-T
gnomAD:1:6590133-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6590133-C-T 1 6590133 C C T yun_nan 29 206 0.140777 Southwest Han 638 4114 0.15508
1:6590133-C-T 1 6590133 C C T fu_jian 64 392 0.163265 South coast Han 2589 14482 0.178774
1:6590133-C-T 1 6590133 C C T tian_jin 127 738 0.172087 Central China Han 2961 18314 0.16168
1:6590133-C-T 1 6590133 C C T he_bei 223 1322 0.168684 Central China Han 2961 18314 0.16168
1:6590133-C-T 1 6590133 C C T hu_bei 451 2858 0.157803 Southwest Han 638 4114 0.15508
1:6590133-C-T 1 6590133 C C T singapore 1218 7092 0.171743 South coast Han 2589 14482 0.178774
1:6590133-C-T 1 6590133 C C T jiang_su 2036 12684 0.160517 Southeast Han 5595 34882 0.160398
1:6590133-C-T 1 6590133 C C T xi_zang 0 2 0.0 Southwest Han 638 4114 0.15508
1:6590133-C-T 1 6590133 C C T liao_ning 62 402 0.154229 Northeast Han 285 1852 0.153888
1:6590133-C-T 1 6590133 C C T qing_hai 0 2 0.0 Northwest Han 346 2140 0.161682
1:6590133-C-T 1 6590133 C C T hai_nan 0 2 0.0 South coast Han 2589 14482 0.178774
1:6590133-C-T 1 6590133 C C T si_chuan 39 264 0.147727 Southwest Han 638 4114 0.15508
1:6590133-C-T 1 6590133 C C T gui_zhou 4 44 0.090909 Southwest Han 638 4114 0.15508
1:6590133-C-T 1 6590133 C C T shan_xi 227 1436 0.158078 Central China Han 2961 18314 0.16168
1:6590133-C-T 1 6590133 C C T guang_xi 10 40 0.25 South coast Han 2589 14482 0.178774
1:6590133-C-T 1 6590133 C C T ji_lin 53 390 0.135897 Northeast Han 285 1852 0.153888
1:6590133-C-T 1 6590133 C C T shang_hai 1924 11942 0.161112 Southeast Han 5595 34882 0.160398
1:6590133-C-T 1 6590133 C C T ning_xia 4 14 0.285714 Northwest Han 346 2140 0.161682
1:6590133-C-T 1 6590133 C C T hei_long_jiang 170 1060 0.160377 Northeast Han 285 1852 0.153888
1:6590133-C-T 1 6590133 C C T nei_meng_gu 9 50 0.18 Northwest Han 346 2140 0.161682
1:6590133-C-T 1 6590133 C C T chong_qing 76 486 0.156379 Southwest Han 638 4114 0.15508
1:6590133-C-T 1 6590133 C C T gan_su 9 62 0.145161 Northwest Han 346 2140 0.161682
1:6590133-C-T 1 6590133 C C T jiang_xi 23 96 0.239583 Southeast Han 5595 34882 0.160398
1:6590133-C-T 1 6590133 C C T guang_dong 39 230 0.169565 South coast Han 2589 14482 0.178774
1:6590133-C-T 1 6590133 C C T he_nan 122 848 0.143868 Central China Han 2961 18314 0.16168
1:6590133-C-T 1 6590133 C C T hu_nan 39 254 0.153543 Southwest Han 638 4114 0.15508
1:6590133-C-T 1 6590133 C C T shan_dong 578 3568 0.161996 Central China Han 2961 18314 0.16168
1:6590133-C-T 1 6590133 C C T bei_jing 1684 10402 0.161892 Central China Han 2961 18314 0.16168
1:6590133-C-T 1 6590133 C C T xin_jiang 3 30 0.1 Northwest Han 346 2140 0.161682
1:6590133-C-T 1 6590133 C C T zhe_jiang 1223 7454 0.164073 Southeast Han 5595 34882 0.160398
1:6590133-C-T 1 6590133 C C T shaan_xi 321 1982 0.161958 Northwest Han 346 2140 0.161682
1:6590133-C-T 1 6590133 C C T xiang_gang 1 4 0.25 South coast Han 2589 14482 0.178774
1:6590133-C-T 1 6590133 C C T tai_wan 1257 6722 0.186998 South coast Han 2589 14482 0.178774
1:6590133-C-T 1 6590133 C C T an_hui 389 2706 0.143755 Southeast Han 5595 34882 0.160398

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6590133-C-T 1 6590133 C C T Southwest Han 638 4114 0.15508
1:6590133-C-T 1 6590133 C C T South coast Han 2589 14482 0.178774
1:6590133-C-T 1 6590133 C C T Central China Han 2961 18314 0.16168
1:6590133-C-T 1 6590133 C C T Southeast Han 5595 34882 0.160398
1:6590133-C-T 1 6590133 C C T Northeast Han 285 1852 0.153888
1:6590133-C-T 1 6590133 C C T Northwest Han 346 2140 0.161682

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.