Variant: 1:6580250-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:C
Alt. Allele:T
Alt. Allele Frequency:0.781263(59376/76000)
dbSNP:rs4908904
PGG.SNV:1:6580250-C-T
gnomAD:1:6580250-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6580250-C-T 1 6580250 C C T tian_jin 581 738 0.787263 Central China Han 14544 18366 0.791898
1:6580250-C-T 1 6580250 C C T yun_nan 166 206 0.805825 Southwest Han 3248 4118 0.788732
1:6580250-C-T 1 6580250 C C T he_bei 1050 1322 0.794251 Central China Han 14544 18366 0.791898
1:6580250-C-T 1 6580250 C C T fu_jian 309 392 0.788265 South coast Han 10927 14488 0.75421
1:6580250-C-T 1 6580250 C C T hu_bei 2258 2862 0.788959 Southwest Han 3248 4118 0.788732
1:6580250-C-T 1 6580250 C C T singapore 5356 7092 0.755217 South coast Han 10927 14488 0.75421
1:6580250-C-T 1 6580250 C C T jiang_su 9988 12738 0.784111 Southeast Han 27463 35028 0.78403
1:6580250-C-T 1 6580250 C C T xi_zang 2 2 1.0 Southwest Han 3248 4118 0.788732
1:6580250-C-T 1 6580250 C C T liao_ning 321 402 0.798507 Northeast Han 1488 1854 0.802589
1:6580250-C-T 1 6580250 C C T qing_hai 2 2 1.0 Northwest Han 1706 2146 0.794967
1:6580250-C-T 1 6580250 C C T hai_nan 2 2 1.0 South coast Han 10927 14488 0.75421
1:6580250-C-T 1 6580250 C C T si_chuan 209 262 0.79771 Southwest Han 3248 4118 0.788732
1:6580250-C-T 1 6580250 C C T gui_zhou 34 44 0.772727 Southwest Han 3248 4118 0.788732
1:6580250-C-T 1 6580250 C C T shan_xi 1150 1438 0.799722 Central China Han 14544 18366 0.791898
1:6580250-C-T 1 6580250 C C T guang_xi 29 40 0.725 South coast Han 10927 14488 0.75421
1:6580250-C-T 1 6580250 C C T ji_lin 319 390 0.817949 Northeast Han 1488 1854 0.802589
1:6580250-C-T 1 6580250 C C T shang_hai 9400 12018 0.78216 Southeast Han 27463 35028 0.78403
1:6580250-C-T 1 6580250 C C T ning_xia 9 14 0.642857 Northwest Han 1706 2146 0.794967
1:6580250-C-T 1 6580250 C C T hei_long_jiang 848 1062 0.798493 Northeast Han 1488 1854 0.802589
1:6580250-C-T 1 6580250 C C T nei_meng_gu 39 50 0.78 Northwest Han 1706 2146 0.794967
1:6580250-C-T 1 6580250 C C T chong_qing 378 488 0.77459 Southwest Han 3248 4118 0.788732
1:6580250-C-T 1 6580250 C C T gan_su 49 62 0.790323 Northwest Han 1706 2146 0.794967
1:6580250-C-T 1 6580250 C C T jiang_xi 69 96 0.71875 Southeast Han 27463 35028 0.78403
1:6580250-C-T 1 6580250 C C T guang_dong 174 230 0.756522 South coast Han 10927 14488 0.75421
1:6580250-C-T 1 6580250 C C T he_nan 685 848 0.807783 Central China Han 14544 18366 0.791898
1:6580250-C-T 1 6580250 C C T hu_nan 201 254 0.791339 Southwest Han 3248 4118 0.788732
1:6580250-C-T 1 6580250 C C T shan_dong 2843 3592 0.791481 Central China Han 14544 18366 0.791898
1:6580250-C-T 1 6580250 C C T bei_jing 8235 10428 0.789701 Central China Han 14544 18366 0.791898
1:6580250-C-T 1 6580250 C C T xin_jiang 22 30 0.733333 Northwest Han 1706 2146 0.794967
1:6580250-C-T 1 6580250 C C T zhe_jiang 5828 7462 0.781024 Southeast Han 27463 35028 0.78403
1:6580250-C-T 1 6580250 C C T shaan_xi 1585 1988 0.797284 Northwest Han 1706 2146 0.794967
1:6580250-C-T 1 6580250 C C T xiang_gang 3 4 0.75 South coast Han 10927 14488 0.75421
1:6580250-C-T 1 6580250 C C T tai_wan 5054 6728 0.751189 South coast Han 10927 14488 0.75421
1:6580250-C-T 1 6580250 C C T an_hui 2178 2714 0.802506 Southeast Han 27463 35028 0.78403

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6580250-C-T 1 6580250 C C T Central China Han 14544 18366 0.791898
1:6580250-C-T 1 6580250 C C T Southwest Han 3248 4118 0.788732
1:6580250-C-T 1 6580250 C C T South coast Han 10927 14488 0.75421
1:6580250-C-T 1 6580250 C C T Southeast Han 27463 35028 0.78403
1:6580250-C-T 1 6580250 C C T Northeast Han 1488 1854 0.802589
1:6580250-C-T 1 6580250 C C T Northwest Han 1706 2146 0.794967

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.