Variant: 1:6579843-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:C
Alt. Allele:T
Alt. Allele Frequency:0.781563(59391/75990)
dbSNP:rs1010584
PGG.SNV:1:6579843-C-T
gnomAD:1:6579843-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6579843-C-T 1 6579843 C C T fu_jian 309 392 0.788265 South coast Han 10933 14500 0.754
1:6579843-C-T 1 6579843 C C T tian_jin 581 738 0.787263 Central China Han 14549 18364 0.792257
1:6579843-C-T 1 6579843 C C T he_bei 1050 1322 0.794251 Central China Han 14549 18364 0.792257
1:6579843-C-T 1 6579843 C C T yun_nan 166 206 0.805825 Southwest Han 3247 4118 0.78849
1:6579843-C-T 1 6579843 C C T hu_bei 2257 2862 0.788609 Southwest Han 3247 4118 0.78849
1:6579843-C-T 1 6579843 C C T singapore 5359 7096 0.755214 South coast Han 10933 14500 0.754
1:6579843-C-T 1 6579843 C C T jiang_su 9986 12730 0.784446 Southeast Han 27469 35010 0.784604
1:6579843-C-T 1 6579843 C C T xi_zang 2 2 1.0 Southwest Han 3247 4118 0.78849
1:6579843-C-T 1 6579843 C C T liao_ning 320 400 0.8 Northeast Han 1486 1852 0.802376
1:6579843-C-T 1 6579843 C C T qing_hai 2 2 1.0 Northwest Han 1707 2146 0.795433
1:6579843-C-T 1 6579843 C C T hai_nan 2 2 1.0 South coast Han 10933 14500 0.754
1:6579843-C-T 1 6579843 C C T si_chuan 209 262 0.79771 Southwest Han 3247 4118 0.78849
1:6579843-C-T 1 6579843 C C T gui_zhou 34 44 0.772727 Southwest Han 3247 4118 0.78849
1:6579843-C-T 1 6579843 C C T shan_xi 1151 1440 0.799306 Central China Han 14549 18364 0.792257
1:6579843-C-T 1 6579843 C C T guang_xi 29 40 0.725 South coast Han 10933 14500 0.754
1:6579843-C-T 1 6579843 C C T ji_lin 319 390 0.817949 Northeast Han 1486 1852 0.802376
1:6579843-C-T 1 6579843 C C T shang_hai 9401 12006 0.783025 Southeast Han 27469 35010 0.784604
1:6579843-C-T 1 6579843 C C T ning_xia 9 14 0.642857 Northwest Han 1707 2146 0.795433
1:6579843-C-T 1 6579843 C C T hei_long_jiang 847 1062 0.797552 Northeast Han 1486 1852 0.802376
1:6579843-C-T 1 6579843 C C T nei_meng_gu 39 50 0.78 Northwest Han 1707 2146 0.795433
1:6579843-C-T 1 6579843 C C T chong_qing 378 488 0.77459 Southwest Han 3247 4118 0.78849
1:6579843-C-T 1 6579843 C C T gan_su 50 62 0.806452 Northwest Han 1707 2146 0.795433
1:6579843-C-T 1 6579843 C C T jiang_xi 69 96 0.71875 Southeast Han 27469 35010 0.784604
1:6579843-C-T 1 6579843 C C T he_nan 685 848 0.807783 Central China Han 14549 18364 0.792257
1:6579843-C-T 1 6579843 C C T guang_dong 174 230 0.756522 South coast Han 10933 14500 0.754
1:6579843-C-T 1 6579843 C C T hu_nan 201 254 0.791339 Southwest Han 3247 4118 0.78849
1:6579843-C-T 1 6579843 C C T shan_dong 2847 3594 0.792154 Central China Han 14549 18364 0.792257
1:6579843-C-T 1 6579843 C C T bei_jing 8235 10422 0.790155 Central China Han 14549 18364 0.792257
1:6579843-C-T 1 6579843 C C T xin_jiang 22 30 0.733333 Northwest Han 1707 2146 0.795433
1:6579843-C-T 1 6579843 C C T zhe_jiang 5833 7468 0.781066 Southeast Han 27469 35010 0.784604
1:6579843-C-T 1 6579843 C C T shaan_xi 1585 1988 0.797284 Northwest Han 1707 2146 0.795433
1:6579843-C-T 1 6579843 C C T xiang_gang 3 4 0.75 South coast Han 10933 14500 0.754
1:6579843-C-T 1 6579843 C C T tai_wan 5057 6736 0.750742 South coast Han 10933 14500 0.754
1:6579843-C-T 1 6579843 C C T an_hui 2180 2710 0.804428 Southeast Han 27469 35010 0.784604

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6579843-C-T 1 6579843 C C T South coast Han 10933 14500 0.754
1:6579843-C-T 1 6579843 C C T Central China Han 14549 18364 0.792257
1:6579843-C-T 1 6579843 C C T Southwest Han 3247 4118 0.78849
1:6579843-C-T 1 6579843 C C T Southeast Han 27469 35010 0.784604
1:6579843-C-T 1 6579843 C C T Northeast Han 1486 1852 0.802376
1:6579843-C-T 1 6579843 C C T Northwest Han 1707 2146 0.795433

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.