Variant: 1:6578685-G-T
Variation Class:SNV (single nucleotide variation)
Reference allele:G
Ancestral allele:G
Alt. Allele:T
Alt. Allele Frequency:0.972439(73847/75940)
dbSNP:rs4339891
PGG.SNV:1:6578685-G-T
gnomAD:1:6578685-G-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6578685-G-T 1 6578685 G G T yun_nan 197 206 0.956311 Southwest Han 3972 4110 0.966423
1:6578685-G-T 1 6578685 G G T tian_jin 729 740 0.985135 Central China Han 18000 18356 0.980606
1:6578685-G-T 1 6578685 G G T fu_jian 382 392 0.97449 South coast Han 13833 14456 0.956904
1:6578685-G-T 1 6578685 G G T he_bei 1302 1320 0.986364 Central China Han 18000 18356 0.980606
1:6578685-G-T 1 6578685 G G T hu_bei 2769 2856 0.969538 Southwest Han 3972 4110 0.966423
1:6578685-G-T 1 6578685 G G T singapore 6750 7068 0.955008 South coast Han 13833 14456 0.956904
1:6578685-G-T 1 6578685 G G T jiang_su 12381 12708 0.974268 Southeast Han 34118 35022 0.974188
1:6578685-G-T 1 6578685 G G T xi_zang 2 2 1.0 Southwest Han 3972 4110 0.966423
1:6578685-G-T 1 6578685 G G T liao_ning 396 402 0.985075 Northeast Han 1823 1852 0.984341
1:6578685-G-T 1 6578685 G G T qing_hai 2 2 1.0 Northwest Han 2101 2144 0.979944
1:6578685-G-T 1 6578685 G G T hai_nan 2 2 1.0 South coast Han 13833 14456 0.956904
1:6578685-G-T 1 6578685 G G T si_chuan 255 262 0.973282 Southwest Han 3972 4110 0.966423
1:6578685-G-T 1 6578685 G G T gui_zhou 39 44 0.886364 Southwest Han 3972 4110 0.966423
1:6578685-G-T 1 6578685 G G T shan_xi 1406 1436 0.979109 Central China Han 18000 18356 0.980606
1:6578685-G-T 1 6578685 G G T guang_xi 39 40 0.975 South coast Han 13833 14456 0.956904
1:6578685-G-T 1 6578685 G G T ji_lin 380 390 0.974359 Northeast Han 1823 1852 0.984341
1:6578685-G-T 1 6578685 G G T shang_hai 11759 12058 0.975203 Southeast Han 34118 35022 0.974188
1:6578685-G-T 1 6578685 G G T ning_xia 14 14 1.0 Northwest Han 2101 2144 0.979944
1:6578685-G-T 1 6578685 G G T hei_long_jiang 1047 1060 0.987736 Northeast Han 1823 1852 0.984341
1:6578685-G-T 1 6578685 G G T nei_meng_gu 48 50 0.96 Northwest Han 2101 2144 0.979944
1:6578685-G-T 1 6578685 G G T chong_qing 467 486 0.960905 Southwest Han 3972 4110 0.966423
1:6578685-G-T 1 6578685 G G T gan_su 62 62 1.0 Northwest Han 2101 2144 0.979944
1:6578685-G-T 1 6578685 G G T jiang_xi 92 94 0.978723 Southeast Han 34118 35022 0.974188
1:6578685-G-T 1 6578685 G G T he_nan 830 846 0.981087 Central China Han 18000 18356 0.980606
1:6578685-G-T 1 6578685 G G T guang_dong 215 228 0.942982 South coast Han 13833 14456 0.956904
1:6578685-G-T 1 6578685 G G T hu_nan 243 254 0.956693 Southwest Han 3972 4110 0.966423
1:6578685-G-T 1 6578685 G G T shan_dong 3519 3588 0.980769 Central China Han 18000 18356 0.980606
1:6578685-G-T 1 6578685 G G T bei_jing 10214 10426 0.979666 Central China Han 18000 18356 0.980606
1:6578685-G-T 1 6578685 G G T xin_jiang 29 30 0.966667 Northwest Han 2101 2144 0.979944
1:6578685-G-T 1 6578685 G G T zhe_jiang 7254 7458 0.972647 Southeast Han 34118 35022 0.974188
1:6578685-G-T 1 6578685 G G T shaan_xi 1946 1986 0.979859 Northwest Han 2101 2144 0.979944
1:6578685-G-T 1 6578685 G G T xiang_gang 4 4 1.0 South coast Han 13833 14456 0.956904
1:6578685-G-T 1 6578685 G G T tai_wan 6441 6722 0.958197 South coast Han 13833 14456 0.956904
1:6578685-G-T 1 6578685 G G T an_hui 2632 2704 0.973373 Southeast Han 34118 35022 0.974188

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6578685-G-T 1 6578685 G G T Southwest Han 3972 4110 0.966423
1:6578685-G-T 1 6578685 G G T Central China Han 18000 18356 0.980606
1:6578685-G-T 1 6578685 G G T South coast Han 13833 14456 0.956904
1:6578685-G-T 1 6578685 G G T Southeast Han 34118 35022 0.974188
1:6578685-G-T 1 6578685 G G T Northeast Han 1823 1852 0.984341
1:6578685-G-T 1 6578685 G G T Northwest Han 2101 2144 0.979944

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.