Variant: 1:6079630-G-C
Variation Class:SNV (single nucleotide variation)
Reference allele:G
Ancestral allele:G
Alt. Allele:C
Alt. Allele Frequency:0.626501(47490/75802)
dbSNP:rs7539366
PGG.SNV:1:6079630-G-C
gnomAD:1:6079630-G-C

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6079630-G-C 1 6079630 G G C tian_jin 475 730 0.650685 Central China Han 11806 18316 0.644573
1:6079630-G-C 1 6079630 G G C fu_jian 244 390 0.625641 South coast Han 8541 14428 0.591974
1:6079630-G-C 1 6079630 G G C yun_nan 121 204 0.593137 Southwest Han 2554 4100 0.622927
1:6079630-G-C 1 6079630 G G C he_bei 883 1314 0.671994 Central China Han 11806 18316 0.644573
1:6079630-G-C 1 6079630 G G C hu_bei 1797 2852 0.630084 Southwest Han 2554 4100 0.622927
1:6079630-G-C 1 6079630 G G C singapore 4185 7092 0.590102 South coast Han 8541 14428 0.591974
1:6079630-G-C 1 6079630 G G C jiang_su 8007 12722 0.629382 Southeast Han 22012 34996 0.628986
1:6079630-G-C 1 6079630 G G C xi_zang 2 2 1.0 Southwest Han 2554 4100 0.622927
1:6079630-G-C 1 6079630 G G C liao_ning 260 402 0.646766 Northeast Han 1183 1844 0.64154
1:6079630-G-C 1 6079630 G G C qing_hai 2 2 1.0 Northwest Han 1394 2118 0.658168
1:6079630-G-C 1 6079630 G G C hai_nan 2 2 1.0 South coast Han 8541 14428 0.591974
1:6079630-G-C 1 6079630 G G C si_chuan 159 258 0.616279 Southwest Han 2554 4100 0.622927
1:6079630-G-C 1 6079630 G G C gui_zhou 19 44 0.431818 Southwest Han 2554 4100 0.622927
1:6079630-G-C 1 6079630 G G C shan_xi 911 1414 0.644272 Central China Han 11806 18316 0.644573
1:6079630-G-C 1 6079630 G G C guang_xi 24 38 0.631579 South coast Han 8541 14428 0.591974
1:6079630-G-C 1 6079630 G G C ji_lin 248 388 0.639175 Northeast Han 1183 1844 0.64154
1:6079630-G-C 1 6079630 G G C shang_hai 7564 12042 0.628135 Southeast Han 22012 34996 0.628986
1:6079630-G-C 1 6079630 G G C ning_xia 9 14 0.642857 Northwest Han 1394 2118 0.658168
1:6079630-G-C 1 6079630 G G C hei_long_jiang 675 1054 0.640417 Northeast Han 1183 1844 0.64154
1:6079630-G-C 1 6079630 G G C nei_meng_gu 33 50 0.66 Northwest Han 1394 2118 0.658168
1:6079630-G-C 1 6079630 G G C chong_qing 293 486 0.602881 Southwest Han 2554 4100 0.622927
1:6079630-G-C 1 6079630 G G C gan_su 49 62 0.790323 Northwest Han 1394 2118 0.658168
1:6079630-G-C 1 6079630 G G C jiang_xi 65 96 0.677083 Southeast Han 22012 34996 0.628986
1:6079630-G-C 1 6079630 G G C guang_dong 150 230 0.652174 South coast Han 8541 14428 0.591974
1:6079630-G-C 1 6079630 G G C he_nan 553 846 0.653664 Central China Han 11806 18316 0.644573
1:6079630-G-C 1 6079630 G G C hu_nan 163 254 0.641732 Southwest Han 2554 4100 0.622927
1:6079630-G-C 1 6079630 G G C shan_dong 2322 3576 0.649329 Central China Han 11806 18316 0.644573
1:6079630-G-C 1 6079630 G G C bei_jing 6662 10436 0.638367 Central China Han 11806 18316 0.644573
1:6079630-G-C 1 6079630 G G C xin_jiang 19 30 0.633333 Northwest Han 1394 2118 0.658168
1:6079630-G-C 1 6079630 G G C zhe_jiang 4661 7422 0.627998 Southeast Han 22012 34996 0.628986
1:6079630-G-C 1 6079630 G G C shaan_xi 1282 1960 0.654082 Northwest Han 1394 2118 0.658168
1:6079630-G-C 1 6079630 G G C xiang_gang 4 4 1.0 South coast Han 8541 14428 0.591974
1:6079630-G-C 1 6079630 G G C tai_wan 3932 6672 0.589329 South coast Han 8541 14428 0.591974
1:6079630-G-C 1 6079630 G G C an_hui 1715 2714 0.631909 Southeast Han 22012 34996 0.628986

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6079630-G-C 1 6079630 G G C Central China Han 11806 18316 0.644573
1:6079630-G-C 1 6079630 G G C South coast Han 8541 14428 0.591974
1:6079630-G-C 1 6079630 G G C Southwest Han 2554 4100 0.622927
1:6079630-G-C 1 6079630 G G C Southeast Han 22012 34996 0.628986
1:6079630-G-C 1 6079630 G G C Northeast Han 1183 1844 0.64154
1:6079630-G-C 1 6079630 G G C Northwest Han 1394 2118 0.658168

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.