Variant: 1:6019871-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:T
Alt. Allele:T
Alt. Allele Frequency:0.143655(10900/75876)
dbSNP:rs2011197
PGG.SNV:1:6019871-C-T
gnomAD:1:6019871-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6019871-C-T 1 6019871 C T T fu_jian 48 388 0.123711 South coast Han 2185 14438 0.151337
1:6019871-C-T 1 6019871 C T T tian_jin 104 724 0.143646 Central China Han 2529 18314 0.138091
1:6019871-C-T 1 6019871 C T T he_bei 167 1310 0.127481 Central China Han 2529 18314 0.138091
1:6019871-C-T 1 6019871 C T T yun_nan 34 202 0.168317 Southwest Han 573 4094 0.139961
1:6019871-C-T 1 6019871 C T T hu_bei 393 2846 0.138089 Southwest Han 573 4094 0.139961
1:6019871-C-T 1 6019871 C T T singapore 1078 7094 0.151959 South coast Han 2185 14438 0.151337
1:6019871-C-T 1 6019871 C T T jiang_su 1841 12724 0.144687 Southeast Han 5069 35062 0.144572
1:6019871-C-T 1 6019871 C T T xi_zang 0 2 0.0 Southwest Han 573 4094 0.139961
1:6019871-C-T 1 6019871 C T T liao_ning 55 402 0.136816 Northeast Han 265 1844 0.143709
1:6019871-C-T 1 6019871 C T T qing_hai 0 2 0.0 Northwest Han 279 2124 0.131356
1:6019871-C-T 1 6019871 C T T hai_nan 0 2 0.0 South coast Han 2185 14438 0.151337
1:6019871-C-T 1 6019871 C T T si_chuan 29 262 0.110687 Southwest Han 573 4094 0.139961
1:6019871-C-T 1 6019871 C T T gui_zhou 6 44 0.136364 Southwest Han 573 4094 0.139961
1:6019871-C-T 1 6019871 C T T shan_xi 205 1424 0.143961 Central China Han 2529 18314 0.138091
1:6019871-C-T 1 6019871 C T T guang_xi 11 40 0.275 South coast Han 2185 14438 0.151337
1:6019871-C-T 1 6019871 C T T ji_lin 47 390 0.120513 Northeast Han 265 1844 0.143709
1:6019871-C-T 1 6019871 C T T shang_hai 1737 12078 0.143815 Southeast Han 5069 35062 0.144572
1:6019871-C-T 1 6019871 C T T ning_xia 5 14 0.357143 Northwest Han 279 2124 0.131356
1:6019871-C-T 1 6019871 C T T hei_long_jiang 163 1052 0.154943 Northeast Han 265 1844 0.143709
1:6019871-C-T 1 6019871 C T T nei_meng_gu 7 50 0.14 Northwest Han 279 2124 0.131356
1:6019871-C-T 1 6019871 C T T chong_qing 71 486 0.146091 Southwest Han 573 4094 0.139961
1:6019871-C-T 1 6019871 C T T gan_su 10 62 0.16129 Northwest Han 279 2124 0.131356
1:6019871-C-T 1 6019871 C T T jiang_xi 12 96 0.125 Southeast Han 5069 35062 0.144572
1:6019871-C-T 1 6019871 C T T he_nan 107 840 0.127381 Central China Han 2529 18314 0.138091
1:6019871-C-T 1 6019871 C T T guang_dong 33 228 0.144737 South coast Han 2185 14438 0.151337
1:6019871-C-T 1 6019871 C T T hu_nan 40 252 0.15873 Southwest Han 573 4094 0.139961
1:6019871-C-T 1 6019871 C T T shan_dong 508 3578 0.141979 Central China Han 2529 18314 0.138091
1:6019871-C-T 1 6019871 C T T bei_jing 1438 10438 0.137766 Central China Han 2529 18314 0.138091
1:6019871-C-T 1 6019871 C T T xin_jiang 5 30 0.166667 Northwest Han 279 2124 0.131356
1:6019871-C-T 1 6019871 C T T zhe_jiang 1087 7450 0.145906 Southeast Han 5069 35062 0.144572
1:6019871-C-T 1 6019871 C T T shaan_xi 252 1966 0.128179 Northwest Han 279 2124 0.131356
1:6019871-C-T 1 6019871 C T T xiang_gang 1 4 0.25 South coast Han 2185 14438 0.151337
1:6019871-C-T 1 6019871 C T T tai_wan 1014 6682 0.151751 South coast Han 2185 14438 0.151337
1:6019871-C-T 1 6019871 C T T an_hui 392 2714 0.144436 Southeast Han 5069 35062 0.144572

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6019871-C-T 1 6019871 C T T South coast Han 2185 14438 0.151337
1:6019871-C-T 1 6019871 C T T Central China Han 2529 18314 0.138091
1:6019871-C-T 1 6019871 C T T Southwest Han 573 4094 0.139961
1:6019871-C-T 1 6019871 C T T Southeast Han 5069 35062 0.144572
1:6019871-C-T 1 6019871 C T T Northeast Han 265 1844 0.143709
1:6019871-C-T 1 6019871 C T T Northwest Han 279 2124 0.131356

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.