Variant: 1:6011129-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:T
Alt. Allele:T
Alt. Allele Frequency:0.144048(10924/75836)
dbSNP:rs6702707
PGG.SNV:1:6011129-C-T
gnomAD:1:6011129-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6011129-C-T 1 6011129 C T T yun_nan 34 202 0.168317 Southwest Han 571 4090 0.139609
1:6011129-C-T 1 6011129 C T T fu_jian 48 388 0.123711 South coast Han 2178 14432 0.150915
1:6011129-C-T 1 6011129 C T T he_bei 167 1308 0.127676 Central China Han 2541 18320 0.138701
1:6011129-C-T 1 6011129 C T T tian_jin 104 724 0.143646 Central China Han 2541 18320 0.138701
1:6011129-C-T 1 6011129 C T T hu_bei 393 2844 0.138186 Southwest Han 571 4090 0.139609
1:6011129-C-T 1 6011129 C T T singapore 1072 7084 0.151327 South coast Han 2178 14432 0.150915
1:6011129-C-T 1 6011129 C T T jiang_su 1842 12710 0.144925 Southeast Han 5091 35026 0.145349
1:6011129-C-T 1 6011129 C T T xi_zang 0 2 0.0 Southwest Han 571 4090 0.139609
1:6011129-C-T 1 6011129 C T T liao_ning 54 402 0.134328 Northeast Han 264 1844 0.143167
1:6011129-C-T 1 6011129 C T T qing_hai 0 2 0.0 Northwest Han 279 2124 0.131356
1:6011129-C-T 1 6011129 C T T hai_nan 0 2 0.0 South coast Han 2178 14432 0.150915
1:6011129-C-T 1 6011129 C T T si_chuan 29 262 0.110687 Southwest Han 571 4090 0.139609
1:6011129-C-T 1 6011129 C T T gui_zhou 6 44 0.136364 Southwest Han 571 4090 0.139609
1:6011129-C-T 1 6011129 C T T shan_xi 205 1424 0.143961 Central China Han 2541 18320 0.138701
1:6011129-C-T 1 6011129 C T T guang_xi 10 40 0.25 South coast Han 2178 14432 0.150915
1:6011129-C-T 1 6011129 C T T ji_lin 47 390 0.120513 Northeast Han 264 1844 0.143167
1:6011129-C-T 1 6011129 C T T shang_hai 1756 12074 0.145436 Southeast Han 5091 35026 0.145349
1:6011129-C-T 1 6011129 C T T ning_xia 5 14 0.357143 Northwest Han 279 2124 0.131356
1:6011129-C-T 1 6011129 C T T hei_long_jiang 163 1052 0.154943 Northeast Han 264 1844 0.143167
1:6011129-C-T 1 6011129 C T T nei_meng_gu 7 50 0.14 Northwest Han 279 2124 0.131356
1:6011129-C-T 1 6011129 C T T chong_qing 69 484 0.142562 Southwest Han 571 4090 0.139609
1:6011129-C-T 1 6011129 C T T gan_su 10 62 0.16129 Northwest Han 279 2124 0.131356
1:6011129-C-T 1 6011129 C T T jiang_xi 12 96 0.125 Southeast Han 5091 35026 0.145349
1:6011129-C-T 1 6011129 C T T he_nan 106 838 0.126492 Central China Han 2541 18320 0.138701
1:6011129-C-T 1 6011129 C T T guang_dong 33 228 0.144737 South coast Han 2178 14432 0.150915
1:6011129-C-T 1 6011129 C T T hu_nan 40 252 0.15873 Southwest Han 571 4090 0.139609
1:6011129-C-T 1 6011129 C T T shan_dong 510 3582 0.142379 Central China Han 2541 18320 0.138701
1:6011129-C-T 1 6011129 C T T bei_jing 1449 10444 0.13874 Central China Han 2541 18320 0.138701
1:6011129-C-T 1 6011129 C T T xin_jiang 5 30 0.166667 Northwest Han 279 2124 0.131356
1:6011129-C-T 1 6011129 C T T zhe_jiang 1085 7432 0.14599 Southeast Han 5091 35026 0.145349
1:6011129-C-T 1 6011129 C T T shaan_xi 252 1966 0.128179 Northwest Han 279 2124 0.131356
1:6011129-C-T 1 6011129 C T T xiang_gang 1 4 0.25 South coast Han 2178 14432 0.150915
1:6011129-C-T 1 6011129 C T T tai_wan 1014 6686 0.15166 South coast Han 2178 14432 0.150915
1:6011129-C-T 1 6011129 C T T an_hui 396 2714 0.14591 Southeast Han 5091 35026 0.145349

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:6011129-C-T 1 6011129 C T T Southwest Han 571 4090 0.139609
1:6011129-C-T 1 6011129 C T T South coast Han 2178 14432 0.150915
1:6011129-C-T 1 6011129 C T T Central China Han 2541 18320 0.138701
1:6011129-C-T 1 6011129 C T T Southeast Han 5091 35026 0.145349
1:6011129-C-T 1 6011129 C T T Northeast Han 264 1844 0.143167
1:6011129-C-T 1 6011129 C T T Northwest Han 279 2124 0.131356

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.