Variant: 1:5994593-C-T
Variation Class:SNV (single nucleotide variation)
Reference allele:C
Ancestral allele:C
Alt. Allele:T
Alt. Allele Frequency:0.064899(4931/75980)
dbSNP:rs12118477
PGG.SNV:1:5994593-C-T
gnomAD:1:5994593-C-T

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:5994593-C-T 1 5994593 C C T tian_jin 42 736 0.057065 Central China Han 1070 18378 0.058222
1:5994593-C-T 1 5994593 C C T fu_jian 30 388 0.07732 South coast Han 1140 14466 0.078805
1:5994593-C-T 1 5994593 C C T yun_nan 20 206 0.097087 Southwest Han 278 4110 0.06764
1:5994593-C-T 1 5994593 C C T he_bei 68 1324 0.05136 Central China Han 1070 18378 0.058222
1:5994593-C-T 1 5994593 C C T hu_bei 184 2854 0.064471 Southwest Han 278 4110 0.06764
1:5994593-C-T 1 5994593 C C T singapore 587 7090 0.082793 South coast Han 1140 14466 0.078805
1:5994593-C-T 1 5994593 C C T jiang_su 798 12726 0.062706 Southeast Han 2222 35040 0.063413
1:5994593-C-T 1 5994593 C C T xi_zang 0 2 0.0 Southwest Han 278 4110 0.06764
1:5994593-C-T 1 5994593 C C T liao_ning 20 402 0.049751 Northeast Han 95 1852 0.051296
1:5994593-C-T 1 5994593 C C T qing_hai 0 2 0.0 Northwest Han 126 2134 0.059044
1:5994593-C-T 1 5994593 C C T hai_nan 0 2 0.0 South coast Han 1140 14466 0.078805
1:5994593-C-T 1 5994593 C C T si_chuan 23 264 0.087121 Southwest Han 278 4110 0.06764
1:5994593-C-T 1 5994593 C C T gui_zhou 5 44 0.113636 Southwest Han 278 4110 0.06764
1:5994593-C-T 1 5994593 C C T shan_xi 96 1432 0.067039 Central China Han 1070 18378 0.058222
1:5994593-C-T 1 5994593 C C T guang_xi 3 40 0.075 South coast Han 1140 14466 0.078805
1:5994593-C-T 1 5994593 C C T ji_lin 26 390 0.066667 Northeast Han 95 1852 0.051296
1:5994593-C-T 1 5994593 C C T shang_hai 792 12050 0.065726 Southeast Han 2222 35040 0.063413
1:5994593-C-T 1 5994593 C C T ning_xia 0 14 0.0 Northwest Han 126 2134 0.059044
1:5994593-C-T 1 5994593 C C T hei_long_jiang 49 1060 0.046226 Northeast Han 95 1852 0.051296
1:5994593-C-T 1 5994593 C C T nei_meng_gu 1 50 0.02 Northwest Han 126 2134 0.059044
1:5994593-C-T 1 5994593 C C T chong_qing 28 486 0.057613 Southwest Han 278 4110 0.06764
1:5994593-C-T 1 5994593 C C T gan_su 4 62 0.064516 Northwest Han 126 2134 0.059044
1:5994593-C-T 1 5994593 C C T jiang_xi 3 96 0.03125 Southeast Han 2222 35040 0.063413
1:5994593-C-T 1 5994593 C C T guang_dong 16 228 0.070175 South coast Han 1140 14466 0.078805
1:5994593-C-T 1 5994593 C C T he_nan 48 848 0.056604 Central China Han 1070 18378 0.058222
1:5994593-C-T 1 5994593 C C T hu_nan 18 254 0.070866 Southwest Han 278 4110 0.06764
1:5994593-C-T 1 5994593 C C T shan_dong 191 3592 0.053174 Central China Han 1070 18378 0.058222
1:5994593-C-T 1 5994593 C C T bei_jing 625 10446 0.059832 Central China Han 1070 18378 0.058222
1:5994593-C-T 1 5994593 C C T xin_jiang 4 30 0.133333 Northwest Han 126 2134 0.059044
1:5994593-C-T 1 5994593 C C T zhe_jiang 445 7456 0.059683 Southeast Han 2222 35040 0.063413
1:5994593-C-T 1 5994593 C C T shaan_xi 117 1976 0.059211 Northwest Han 126 2134 0.059044
1:5994593-C-T 1 5994593 C C T xiang_gang 0 4 0.0 South coast Han 1140 14466 0.078805
1:5994593-C-T 1 5994593 C C T tai_wan 504 6714 0.075067 South coast Han 1140 14466 0.078805
1:5994593-C-T 1 5994593 C C T an_hui 184 2712 0.067847 Southeast Han 2222 35040 0.063413

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:5994593-C-T 1 5994593 C C T Central China Han 1070 18378 0.058222
1:5994593-C-T 1 5994593 C C T South coast Han 1140 14466 0.078805
1:5994593-C-T 1 5994593 C C T Southwest Han 278 4110 0.06764
1:5994593-C-T 1 5994593 C C T Southeast Han 2222 35040 0.063413
1:5994593-C-T 1 5994593 C C T Northeast Han 95 1852 0.051296
1:5994593-C-T 1 5994593 C C T Northwest Han 126 2134 0.059044

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.