Variant: 1:5989503-A-G
Variation Class:SNV (single nucleotide variation)
Reference allele:A
Ancestral allele:G
Alt. Allele:G
Alt. Allele Frequency:0.935971(71072/75934)
dbSNP:rs12742075
PGG.SNV:1:5989503-A-G
gnomAD:1:5989503-A-G

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Province Level Genetic Region Level
Province Alt Allele
Count
Individual
Count
Alt Allele
Frequency
Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:5989503-A-G 1 5989503 A G G tian_jin 699 740 0.944595 Central China Han 17312 18368 0.942509
1:5989503-A-G 1 5989503 A G G yun_nan 186 204 0.911765 Southwest Han 3829 4098 0.934358
1:5989503-A-G 1 5989503 A G G he_bei 1255 1322 0.949319 Central China Han 17312 18368 0.942509
1:5989503-A-G 1 5989503 A G G fu_jian 361 390 0.925641 South coast Han 13328 14448 0.922481
1:5989503-A-G 1 5989503 A G G hu_bei 2669 2848 0.937149 Southwest Han 3829 4098 0.934358
1:5989503-A-G 1 5989503 A G G singapore 6500 7076 0.918598 South coast Han 13328 14448 0.922481
1:5989503-A-G 1 5989503 A G G jiang_su 11930 12718 0.938041 Southeast Han 32832 35032 0.9372
1:5989503-A-G 1 5989503 A G G xi_zang 2 2 1.0 Southwest Han 3829 4098 0.934358
1:5989503-A-G 1 5989503 A G G liao_ning 381 400 0.9525 Northeast Han 1759 1852 0.949784
1:5989503-A-G 1 5989503 A G G qing_hai 2 2 1.0 Northwest Han 2012 2136 0.941948
1:5989503-A-G 1 5989503 A G G hai_nan 2 2 1.0 South coast Han 13328 14448 0.922481
1:5989503-A-G 1 5989503 A G G si_chuan 241 264 0.912879 Southwest Han 3829 4098 0.934358
1:5989503-A-G 1 5989503 A G G gui_zhou 39 44 0.886364 Southwest Han 3829 4098 0.934358
1:5989503-A-G 1 5989503 A G G shan_xi 1339 1432 0.935056 Central China Han 17312 18368 0.942509
1:5989503-A-G 1 5989503 A G G guang_xi 37 40 0.925 South coast Han 13328 14448 0.922481
1:5989503-A-G 1 5989503 A G G ji_lin 364 388 0.938144 Northeast Han 1759 1852 0.949784
1:5989503-A-G 1 5989503 A G G shang_hai 11272 12062 0.934505 Southeast Han 32832 35032 0.9372
1:5989503-A-G 1 5989503 A G G ning_xia 14 14 1.0 Northwest Han 2012 2136 0.941948
1:5989503-A-G 1 5989503 A G G hei_long_jiang 1014 1064 0.953008 Northeast Han 1759 1852 0.949784
1:5989503-A-G 1 5989503 A G G nei_meng_gu 49 50 0.98 Northwest Han 2012 2136 0.941948
1:5989503-A-G 1 5989503 A G G chong_qing 458 486 0.942387 Southwest Han 3829 4098 0.934358
1:5989503-A-G 1 5989503 A G G gan_su 58 62 0.935484 Northwest Han 2012 2136 0.941948
1:5989503-A-G 1 5989503 A G G jiang_xi 93 96 0.96875 Southeast Han 32832 35032 0.9372
1:5989503-A-G 1 5989503 A G G guang_dong 212 228 0.929825 South coast Han 13328 14448 0.922481
1:5989503-A-G 1 5989503 A G G he_nan 799 844 0.946682 Central China Han 17312 18368 0.942509
1:5989503-A-G 1 5989503 A G G hu_nan 234 250 0.936 Southwest Han 3829 4098 0.934358
1:5989503-A-G 1 5989503 A G G shan_dong 3401 3590 0.947354 Central China Han 17312 18368 0.942509
1:5989503-A-G 1 5989503 A G G bei_jing 9819 10440 0.940517 Central China Han 17312 18368 0.942509
1:5989503-A-G 1 5989503 A G G xin_jiang 26 30 0.866667 Northwest Han 2012 2136 0.941948
1:5989503-A-G 1 5989503 A G G zhe_jiang 7009 7444 0.941564 Southeast Han 32832 35032 0.9372
1:5989503-A-G 1 5989503 A G G shaan_xi 1863 1978 0.94186 Northwest Han 2012 2136 0.941948
1:5989503-A-G 1 5989503 A G G xiang_gang 4 4 1.0 South coast Han 13328 14448 0.922481
1:5989503-A-G 1 5989503 A G G tai_wan 6212 6708 0.926058 South coast Han 13328 14448 0.922481
1:5989503-A-G 1 5989503 A G G an_hui 2528 2712 0.932153 Southeast Han 32832 35032 0.9372

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.

Prevalence of province populations

Chart
SNV Chrom Position Ref. Ancestral
allele
Alt. Genetic
Region
Alt Allele
Count
Individual
Count
Alt Allele
Frequency
1:5989503-A-G 1 5989503 A G G Central China Han 17312 18368 0.942509
1:5989503-A-G 1 5989503 A G G Southwest Han 3829 4098 0.934358
1:5989503-A-G 1 5989503 A G G South coast Han 13328 14448 0.922481
1:5989503-A-G 1 5989503 A G G Southeast Han 32832 35032 0.9372
1:5989503-A-G 1 5989503 A G G Northeast Han 1759 1852 0.949784
1:5989503-A-G 1 5989503 A G G Northwest Han 2012 2136 0.941948

The above section provides alternative allele frequency (AAF) information for selected variant cross world-wide populations whose genomes as well the variant have been included in the database. In the AAF distribution map, each pie represents the allele frequency for a population. Users can custom the populations, data sets and ancestries to show or not show the corresponding pies. The figure is interactive, and users can operated the items in the figure to get detailed information or download the figure. For example, by hovering a mouse in each pie, it return to you the population name that the pie represents and give you the frequencies and genotypes in detail. By switching figure to table in the top right corner, the web returns the detailed information in table format. Users can use the “export to” button to download the table in a suitable format.